Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXC9P31274 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXC9P31274 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.1□□□□□ -1.59
HOXC9P31274 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
HOXC9P31274 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
HOXC9P31274 U3.23-201ENST00000391132 200 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXC9P31274 AL158050.1-201ENST00000416077 457 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXC9P31274 VN1R42P-201ENST00000424651 344 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 AP000907.1-201ENST00000428428 510 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 SUN3-208ENST00000453192 801 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXC9P31274 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.1□□□□□ -1.59
HOXC9P31274 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXC9P31274 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC5.1□□□□□ -1.59
HOXC9P31274 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXC9P31274 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
HOXC9P31274 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXC9P31274 AC017037.1-201ENST00000508460 471 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 HMGN1P11-201ENST00000508668 303 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.1□□□□□ -1.59
HOXC9P31274 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXC9P31274 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXC9P31274 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXC9P31274 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXC9P31274 AC090330.1-201ENST00000588646 764 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
HOXC9P31274 AC133794.1-201ENST00000602731 914 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 AC079880.2-201ENST00000603790 1213 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 AC026790.2-201ENST00000606282 430 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 AL135786.2-201ENST00000608422 615 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC5.1□□□□□ -1.59
HOXC9P31274 AC079684.1-201ENST00000621405 437 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 AC006840.1-201ENST00000623069 542 ntBASIC5.1□□□□□ -1.59
HOXC9P31274 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXC9P31274 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXC9P31274 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXC9P31274 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
HOXC9P31274 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
HOXC9P31274 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXC9P31274 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXC9P31274 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXC9P31274 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
HOXC9P31274 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXC9P31274 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXC9P31274 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.09□□□□□ -1.59
HOXC9P31274 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 MTCO1P4-201ENST00000520516 1409 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 IL6STP1-201ENST00000346911 1020 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC5.09□□□□□ -1.59
HOXC9P31274 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 RNU6-796P-201ENST00000391086 107 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 RSL24D1P1-201ENST00000404972 493 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 AL606495.1-201ENST00000422100 813 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 HSFY1P1-201ENST00000423928 1178 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXC9P31274 AL160175.1-201ENST00000428124 247 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC5.09□□□□□ -1.59
HOXC9P31274 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC5.09□□□□□ -1.59
HOXC9P31274 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXC9P31274 RPS26P28-201ENST00000470806 348 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 RN7SL293P-201ENST00000481765 281 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 AC107398.1-201ENST00000486904 505 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXC9P31274 AC119751.4-201ENST00000507498 357 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXC9P31274 PPBPP1-201ENST00000510807 373 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 MTCO3P27-201ENST00000514397 196 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXC9P31274 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXC9P31274 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXC9P31274 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXC9P31274 AC005412.1-201ENST00000580812 1049 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC5.09□□□□□ -1.59
HOXC9P31274 SUMO2P14-201ENST00000604488 293 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 AC097504.2-201ENST00000608088 454 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 AP001033.2-201ENST00000609701 1003 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 AC096577.2-201ENST00000611455 153 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 AC009269.6-201ENST00000621778 588 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC5.09□□□□□ -1.59
HOXC9P31274 AC119674.1-207ENST00000641355 633 ntBASIC5.09□□□□□ -1.59
HOXC9P31274 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HOXC9P31274 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.09□□□□□ -1.6
HOXC9P31274 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.6
HOXC9P31274 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.09□□□□□ -1.6
HOXC9P31274 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC9P31274 RLIMP2-201ENST00000427891 1563 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC9P31274 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC9P31274 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms