Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.49□□□□□ -1.85
USF1P22415 AC009452.1-201ENST00000640823 606 ntBASIC3.49□□□□□ -1.85
USF1P22415 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
USF1P22415 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USF1P22415 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.49□□□□□ -1.85
USF1P22415 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.49□□□□□ -1.85
USF1P22415 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.48□□□□□ -1.85
USF1P22415 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.48□□□□□ -1.85
USF1P22415 AC095050.2-201ENST00000510748 1458 ntBASIC3.48□□□□□ -1.85
USF1P22415 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
USF1P22415 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
USF1P22415 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USF1P22415 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.48□□□□□ -1.85
USF1P22415 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USF1P22415 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USF1P22415 AL031985.3-201ENST00000565390 2449 ntBASIC3.48□□□□□ -1.85
USF1P22415 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USF1P22415 RNU1-87P-201ENST00000363727 170 ntBASIC3.48□□□□□ -1.85
USF1P22415 MIR1179-201ENST00000408703 91 ntBASIC3.48□□□□□ -1.85
USF1P22415 RNA5SP39-201ENST00000411245 120 ntBASIC3.48□□□□□ -1.85
USF1P22415 AMD1P2-201ENST00000412936 992 ntBASIC3.48□□□□□ -1.85
USF1P22415 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.48□□□□□ -1.85
USF1P22415 AL356276.2-201ENST00000435919 558 ntBASIC3.48□□□□□ -1.85
USF1P22415 AL133477.1-201ENST00000457472 514 ntBASIC3.48□□□□□ -1.85
USF1P22415 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC3.48□□□□□ -1.85
USF1P22415 AC025459.1-201ENST00000504072 156 ntBASIC3.48□□□□□ -1.85
USF1P22415 FTH1P9-201ENST00000513251 355 ntBASIC3.48□□□□□ -1.85
USF1P22415 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.48□□□□□ -1.85
USF1P22415 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC3.48□□□□□ -1.85
USF1P22415 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.48□□□□□ -1.85
USF1P22415 OR4A2P-201ENST00000527276 913 ntBASIC3.48□□□□□ -1.85
USF1P22415 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.48□□□□□ -1.85
USF1P22415 MIR5685-201ENST00000579080 79 ntBASIC3.48□□□□□ -1.85
USF1P22415 AC005255.1-201ENST00000593748 216 ntBASIC3.48□□□□□ -1.85
USF1P22415 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USF1P22415 MIR6075-201ENST00000620782 95 ntBASIC3.48□□□□□ -1.85
USF1P22415 AC008013.2-202ENST00000637965 364 ntBASIC3.48□□□□□ -1.85
USF1P22415 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.48□□□□□ -1.85
USF1P22415 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
USF1P22415 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.48□□□□□ -1.85
USF1P22415 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USF1P22415 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USF1P22415 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.48□□□□□ -1.85
USF1P22415 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USF1P22415 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.48□□□□□ -1.85
USF1P22415 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USF1P22415 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USF1P22415 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
USF1P22415 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USF1P22415 MTND4P31-201ENST00000425607 1343 ntBASIC3.47□□□□□ -1.85
USF1P22415 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.47□□□□□ -1.85
USF1P22415 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.47□□□□□ -1.85
USF1P22415 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
USF1P22415 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.47□□□□□ -1.85
USF1P22415 GTF2H2B-203ENST00000508065 1432 ntBASIC3.47□□□□□ -1.85
USF1P22415 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
USF1P22415 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
USF1P22415 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USF1P22415 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
USF1P22415 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
USF1P22415 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
USF1P22415 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC3.47□□□□□ -1.85
USF1P22415 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
USF1P22415 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.47□□□□□ -1.85
USF1P22415 TCEA1P4-201ENST00000415066 844 ntBASIC3.47□□□□□ -1.85
USF1P22415 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.47□□□□□ -1.85
USF1P22415 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.47□□□□□ -1.85
USF1P22415 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USF1P22415 AC115285.1-201ENST00000424879 736 ntBASIC3.47□□□□□ -1.85
USF1P22415 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.47□□□□□ -1.85
USF1P22415 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC3.47□□□□□ -1.85
USF1P22415 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USF1P22415 HGF-207ENST00000453018 721 ntTSL 3 BASIC3.47□□□□□ -1.85
USF1P22415 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.47□□□□□ -1.85
USF1P22415 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USF1P22415 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.47□□□□□ -1.85
USF1P22415 RPL30P11-201ENST00000495304 339 ntBASIC3.47□□□□□ -1.85
USF1P22415 AC108145.1-201ENST00000503770 153 ntBASIC3.47□□□□□ -1.85
USF1P22415 AC139783.2-201ENST00000504847 1145 ntBASIC3.47□□□□□ -1.85
USF1P22415 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.47□□□□□ -1.85
USF1P22415 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC3.47□□□□□ -1.85
USF1P22415 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC3.47□□□□□ -1.85
USF1P22415 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USF1P22415 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC3.47□□□□□ -1.85
USF1P22415 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.47□□□□□ -1.85
USF1P22415 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.47□□□□□ -1.85
USF1P22415 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.47□□□□□ -1.85
USF1P22415 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.47□□□□□ -1.85
USF1P22415 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.47□□□□□ -1.85
USF1P22415 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC3.47□□□□□ -1.85
USF1P22415 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.47□□□□□ -1.85
USF1P22415 AC067805.1-201ENST00000559344 470 ntBASIC3.47□□□□□ -1.85
USF1P22415 CSNK1A1P1-202ENST00000563423 981 ntBASIC3.47□□□□□ -1.85
USF1P22415 AC120057.2-201ENST00000571520 271 ntBASIC3.47□□□□□ -1.85
USF1P22415 AC022655.2-201ENST00000577280 318 ntBASIC3.47□□□□□ -1.85
USF1P22415 RN7SL703P-201ENST00000578485 302 ntBASIC3.47□□□□□ -1.85
USF1P22415 AC067852.4-201ENST00000590314 478 ntBASIC3.47□□□□□ -1.85
USF1P22415 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC3.47□□□□□ -1.85
USF1P22415 MIR7702-201ENST00000621931 59 ntBASIC3.47□□□□□ -1.85
USF1P22415 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms