Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RN7SKP66-201ENST00000516681 231 ntBASIC5.85□□□□□ -1.47
HMGB1P09429 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC5.85□□□□□ -1.47
HMGB1P09429 AC005868.1-201ENST00000536421 331 ntBASIC5.85□□□□□ -1.47
HMGB1P09429 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.85□□□□□ -1.47
HMGB1P09429 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.85□□□□□ -1.47
HMGB1P09429 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.85□□□□□ -1.47
HMGB1P09429 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.85□□□□□ -1.47
HMGB1P09429 MIR4691-201ENST00000583764 85 ntBASIC5.85□□□□□ -1.47
HMGB1P09429 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.85□□□□□ -1.47
HMGB1P09429 AC087283.1-201ENST00000604029 1074 ntBASIC5.85□□□□□ -1.47
HMGB1P09429 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HMGB1P09429 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
HMGB1P09429 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HMGB1P09429 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.85□□□□□ -1.47
HMGB1P09429 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HMGB1P09429 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HMGB1P09429 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HMGB1P09429 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
HMGB1P09429 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC5.84□□□□□ -1.47
HMGB1P09429 MIR765-201ENST00000390226 114 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.84□□□□□ -1.47
HMGB1P09429 RAD23BP2-201ENST00000416003 1207 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 AC069213.2-201ENST00000420238 366 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HMGB1P09429 VDAC1P3-201ENST00000434069 851 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC5.84□□□□□ -1.47
HMGB1P09429 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
HMGB1P09429 AC239367.2-201ENST00000447309 705 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 AL162151.2-201ENST00000448875 158 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.84□□□□□ -1.47
HMGB1P09429 RN7SL319P-201ENST00000480656 221 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 MTCYBP16-201ENST00000509187 1129 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 RNA5SP249-201ENST00000516127 99 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 IGLV2-28-201ENST00000520681 304 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC5.84□□□□□ -1.47
HMGB1P09429 MED28P5-201ENST00000528254 438 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HMGB1P09429 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.84□□□□□ -1.47
HMGB1P09429 AC126177.3-201ENST00000551839 688 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 AL121603.1-201ENST00000553815 142 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.84□□□□□ -1.47
HMGB1P09429 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.84□□□□□ -1.47
HMGB1P09429 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC5.84□□□□□ -1.47
HMGB1P09429 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
HMGB1P09429 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HMGB1P09429 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
HMGB1P09429 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HMGB1P09429 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HMGB1P09429 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HMGB1P09429 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.84□□□□□ -1.47
HMGB1P09429 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.48
HMGB1P09429 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
HMGB1P09429 AC017104.4-201ENST00000636283 1592 ntBASIC5.84□□□□□ -1.48
HMGB1P09429 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC5.83□□□□□ -1.48
HMGB1P09429 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
HMGB1P09429 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.83□□□□□ -1.48
HMGB1P09429 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
HMGB1P09429 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
HMGB1P09429 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HMGB1P09429 AC109315.1-201ENST00000584143 1347 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 AC008033.1-201ENST00000216407 1162 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HMGB1P09429 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
HMGB1P09429 RN7SKP103-201ENST00000363848 320 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC5.83□□□□□ -1.48
HMGB1P09429 RNU1-106P-201ENST00000384382 164 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
HMGB1P09429 HSPE1P26-201ENST00000405341 275 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 AP002530.1-201ENST00000405705 684 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC5.83□□□□□ -1.48
HMGB1P09429 MTCO3P12-201ENST00000416718 547 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 AF186996.5-201ENST00000418098 904 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.83□□□□□ -1.48
HMGB1P09429 AP001086.1-201ENST00000494882 321 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
HMGB1P09429 HMGB3P16-201ENST00000508037 287 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC5.83□□□□□ -1.48
HMGB1P09429 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.83□□□□□ -1.48
HMGB1P09429 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.83□□□□□ -1.48
HMGB1P09429 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.83□□□□□ -1.48
HMGB1P09429 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC5.83□□□□□ -1.48
HMGB1P09429 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.83□□□□□ -1.48
HMGB1P09429 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.83□□□□□ -1.48
HMGB1P09429 AL133457.1-201ENST00000564251 987 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HMGB1P09429 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC5.83□□□□□ -1.48
HMGB1P09429 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.83□□□□□ -1.48
HMGB1P09429 MEMO1P5-201ENST00000604810 406 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC5.83□□□□□ -1.48
HMGB1P09429 AC073348.1-201ENST00000623002 331 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 AL356121.2-201ENST00000624715 780 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC5.83□□□□□ -1.48
HMGB1P09429 U6.101-201ENST00000637707 76 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 LINC02211-204ENST00000642024 1070 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HMGB1P09429 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HMGB1P09429 CR788268.1-201ENST00000603931 1809 ntBASIC5.83□□□□□ -1.48
HMGB1P09429 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HMGB1P09429 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms