Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
SHOX2O60902 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.83□□□□□ -1.8
SHOX2O60902 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.83□□□□□ -1.8
SHOX2O60902 AC009948.4-201ENST00000604692 675 ntBASIC3.83□□□□□ -1.8
SHOX2O60902 AC090948.1-201ENST00000607464 549 ntBASIC3.83□□□□□ -1.8
SHOX2O60902 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.83□□□□□ -1.8
SHOX2O60902 AC092159.4-201ENST00000624944 550 ntBASIC3.83□□□□□ -1.8
SHOX2O60902 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
SHOX2O60902 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SHOX2O60902 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SHOX2O60902 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SHOX2O60902 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.83□□□□□ -1.8
SHOX2O60902 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.82□□□□□ -1.8
SHOX2O60902 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.82□□□□□ -1.8
SHOX2O60902 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
SHOX2O60902 ZNF542P-204ENST00000482727 1305 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
SHOX2O60902 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC3.82□□□□□ -1.8
SHOX2O60902 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 RNU6-1251P-201ENST00000364502 107 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 RNA5SP515-201ENST00000364570 118 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 MIR129-1-201ENST00000384972 72 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 MIR199A2-201ENST00000385289 110 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 SNORD65-201ENST00000391079 73 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SHOX2O60902 SKINT1L-201ENST00000401057 817 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SHOX2O60902 NDUFB1P1-201ENST00000435191 180 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 RPL23AP22-201ENST00000437556 453 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 RNU6-1218P-201ENST00000458990 108 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 RPS27P29-201ENST00000463110 252 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 MTND6P6-201ENST00000478031 263 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 AC017007.3-201ENST00000479865 435 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 AC021146.5-201ENST00000503544 545 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC3.82□□□□□ -1.8
SHOX2O60902 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.82□□□□□ -1.8
SHOX2O60902 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC3.82□□□□□ -1.8
SHOX2O60902 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC3.82□□□□□ -1.8
SHOX2O60902 RN7SKP92-201ENST00000517266 244 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.82□□□□□ -1.8
SHOX2O60902 AP006245.1-201ENST00000522549 120 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 SMARCE1P4-201ENST00000523647 241 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SHOX2O60902 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.82□□□□□ -1.8
SHOX2O60902 AC068831.4-201ENST00000556118 109 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 AL845331.3-202ENST00000562856 261 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 AC037471.2-201ENST00000564941 598 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 AC053481.3-201ENST00000577881 843 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 AC115989.2-201ENST00000578640 563 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SHOX2O60902 AC020915.5-201ENST00000596836 964 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.82□□□□□ -1.8
SHOX2O60902 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.82□□□□□ -1.8
SHOX2O60902 AL035461.2-201ENST00000619201 524 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 MIR6830-201ENST00000636015 70 ntBASIC3.82□□□□□ -1.8
SHOX2O60902 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SHOX2O60902 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
SHOX2O60902 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.81□□□□□ -1.8
SHOX2O60902 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.81□□□□□ -1.8
SHOX2O60902 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.81□□□□□ -1.8
SHOX2O60902 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SHOX2O60902 RNA5SP42-201ENST00000364278 115 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 U1.1-201ENST00000384101 164 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AC025750.1-201ENST00000399891 379 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 RN7SKP182-201ENST00000410772 298 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 TRGV6-201ENST00000417928 299 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.81□□□□□ -1.8
SHOX2O60902 ARF4P2-201ENST00000430209 526 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.81□□□□□ -1.8
SHOX2O60902 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.81□□□□□ -1.8
SHOX2O60902 RPL31P53-201ENST00000457065 348 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 snoU13.1-201ENST00000459157 104 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AC021205.2-201ENST00000480069 347 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 RPS4XP22-201ENST00000480755 780 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
SHOX2O60902 AC020893.1-201ENST00000502452 580 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AC010627.1-201ENST00000503819 1294 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AK3P4-201ENST00000504283 583 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC3.81□□□□□ -1.8
SHOX2O60902 RNU6-347P-201ENST00000516658 105 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 RN7SKP289-201ENST00000517244 295 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.81□□□□□ -1.8
SHOX2O60902 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.81□□□□□ -1.8
SHOX2O60902 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC3.81□□□□□ -1.8
SHOX2O60902 CYCSP29-201ENST00000533731 318 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.81□□□□□ -1.8
SHOX2O60902 TVP23BP1-201ENST00000557500 617 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.81□□□□□ -1.8
SHOX2O60902 PSMA6P4-201ENST00000603247 718 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AL161729.3-201ENST00000603533 673 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AL445423.1-201ENST00000609941 536 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AC024941.1-201ENST00000612250 334 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AL133370.2-201ENST00000619934 439 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.81□□□□□ -1.8
SHOX2O60902 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.81□□□□□ -1.8
SHOX2O60902 CDRT1-208ENST00000630868 794 ntBASIC3.81□□□□□ -1.8
SHOX2O60902 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
SHOX2O60902 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms