Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 DDX39BP2-208ENST00000453923 258 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 ELOCP12-201ENST00000458706 328 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 RN7SL812P-201ENST00000493791 279 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AL035404.1-201ENST00000497982 568 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AC113430.1-201ENST00000506872 718 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AC104108.1-201ENST00000509930 412 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 TPT1P8-201ENST00000510120 555 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AC008958.1-201ENST00000511047 682 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 PRELID3BP4-201ENST00000515476 571 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 OR8R1P-201ENST00000543943 764 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 CYB5AP5-201ENST00000549779 389 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 IMMP1LP1-201ENST00000605170 488 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AC090912.3-201ENST00000609775 533 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 SNX18P1Y-201ENST00000616231 511 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 MIR8059-201ENST00000620427 81 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 AC099654.8-201ENST00000637757 681 ntBASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC3Q9BQI4 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 AC090971.4-201ENST00000560291 1800 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 OR51H2P-202ENST00000641424 3046 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 SNORA72.3-201ENST00000365074 132 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 SNORA48.7-201ENST00000391302 135 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 AL161909.1-201ENST00000397390 712 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 AC106883.1-201ENST00000418805 562 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 USP9YP21-201ENST00000420603 432 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 AC073069.1-201ENST00000428657 441 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 AL132765.1-201ENST00000434165 553 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 EEF1A1P1-201ENST00000447052 739 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 CDC42P1-201ENST00000456658 548 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 TRBV8-2-201ENST00000475637 270 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 HMGB1P1-201ENST00000522557 636 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 AGGF1P6-201ENST00000569213 976 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 MTND4LP24-201ENST00000572277 291 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 VN1R88P-201ENST00000596787 292 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 AC091046.2-201ENST00000620775 665 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 AC015726.3-201ENST00000624501 418 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 AC046144.1-201ENST00000478559 1853 ntBASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC3Q9BQI4 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 AL445189.1-201ENST00000405722 338 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 RNU2-6P-201ENST00000411404 190 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 CEACAMP8-201ENST00000413902 580 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 COX6CP15-201ENST00000426313 211 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 CDY14P-201ENST00000431260 1014 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 YWHAEP5-201ENST00000431545 765 ntBASIC4.22□□□□□ -1.73
CCDC3Q9BQI4 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms