Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
ERCC4Q92889 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.68□□□□□ -1.5
ERCC4Q92889 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.68□□□□□ -1.5
ERCC4Q92889 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
ERCC4Q92889 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
ERCC4Q92889 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
ERCC4Q92889 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
ERCC4Q92889 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.67□□□□□ -1.5
ERCC4Q92889 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
ERCC4Q92889 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.67□□□□□ -1.5
ERCC4Q92889 AC139713.2-215ENST00000641428 5037 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.67□□□□□ -1.5
ERCC4Q92889 RNU6-1119P-201ENST00000384349 108 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 SNORA67-201ENST00000384423 137 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 SNORA68.2-201ENST00000391263 128 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 AC005522.1-201ENST00000395416 346 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 AL161909.1-201ENST00000397390 712 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.67□□□□□ -1.5
ERCC4Q92889 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC5.67□□□□□ -1.5
ERCC4Q92889 PGBD4P8-201ENST00000412993 562 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 CEACAMP8-201ENST00000413902 580 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 NPM1P4-201ENST00000414095 812 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 CDK8P2-201ENST00000415020 547 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC5.67□□□□□ -1.5
ERCC4Q92889 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC5.67□□□□□ -1.5
ERCC4Q92889 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC5.67□□□□□ -1.5
ERCC4Q92889 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC5.67□□□□□ -1.5
ERCC4Q92889 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC5.67□□□□□ -1.5
ERCC4Q92889 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.67□□□□□ -1.5
ERCC4Q92889 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.67□□□□□ -1.5
ERCC4Q92889 AL450023.3-201ENST00000440592 271 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 AC092809.1-201ENST00000441469 474 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 AC104306.1-201ENST00000449702 371 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.67□□□□□ -1.5
ERCC4Q92889 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.67□□□□□ -1.5
ERCC4Q92889 RN7SL443P-201ENST00000464331 290 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 SRRM1P2-201ENST00000464531 1192 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 AC011825.1-201ENST00000484967 388 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC5.67□□□□□ -1.5
ERCC4Q92889 ATP1B1P1-201ENST00000509767 915 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 RNA5SP360-201ENST00000516555 118 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
ERCC4Q92889 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.67□□□□□ -1.5
ERCC4Q92889 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
ERCC4Q92889 AC022882.1-201ENST00000532142 501 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.67□□□□□ -1.5
ERCC4Q92889 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC5.67□□□□□ -1.5
ERCC4Q92889 GTF2IP8-201ENST00000560687 584 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 AC012435.1-202ENST00000568772 240 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
ERCC4Q92889 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.67□□□□□ -1.5
ERCC4Q92889 VN1R92P-201ENST00000598511 928 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 U73023.1-201ENST00000603134 700 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 AC133552.5-201ENST00000604266 540 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 AC087752.4-201ENST00000605911 462 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC5.67□□□□□ -1.5
ERCC4Q92889 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.67□□□□□ -1.5
ERCC4Q92889 MIR7844-201ENST00000616161 122 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC5.67□□□□□ -1.5
ERCC4Q92889 AC099842.1-201ENST00000619919 596 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
ERCC4Q92889 AC074101.1-201ENST00000637861 241 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 AC006927.3-201ENST00000638789 384 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.67□□□□□ -1.5
ERCC4Q92889 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
ERCC4Q92889 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
ERCC4Q92889 AC104118.1-201ENST00000607625 1589 ntBASIC5.67□□□□□ -1.5
ERCC4Q92889 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
ERCC4Q92889 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
ERCC4Q92889 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
ERCC4Q92889 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
ERCC4Q92889 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
ERCC4Q92889 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
ERCC4Q92889 AC046144.1-201ENST00000478559 1853 ntBASIC5.66□□□□□ -1.5
ERCC4Q92889 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
ERCC4Q92889 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.66□□□□□ -1.5
ERCC4Q92889 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
ERCC4Q92889 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
ERCC4Q92889 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
ERCC4Q92889 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.66□□□□□ -1.5
ERCC4Q92889 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
ERCC4Q92889 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
ERCC4Q92889 RNU5D-1-201ENST00000363299 116 ntBASIC5.66□□□□□ -1.5
ERCC4Q92889 RNU1-43P-201ENST00000365052 165 ntBASIC5.66□□□□□ -1.5
ERCC4Q92889 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC5.66□□□□□ -1.5
ERCC4Q92889 RNU6-253P-201ENST00000384730 105 ntBASIC5.66□□□□□ -1.5
ERCC4Q92889 SNORA77-201ENST00000408716 125 ntBASIC5.66□□□□□ -1.5
ERCC4Q92889 RPL23AP39-201ENST00000415533 405 ntBASIC5.66□□□□□ -1.5
ERCC4Q92889 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC5.66□□□□□ -1.5
ERCC4Q92889 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.66□□□□□ -1.5
ERCC4Q92889 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC5.66□□□□□ -1.5
ERCC4Q92889 Z74696.2-201ENST00000436514 498 ntBASIC5.66□□□□□ -1.5
ERCC4Q92889 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC5.66□□□□□ -1.5
ERCC4Q92889 MTND1P30-201ENST00000441241 901 ntBASIC5.66□□□□□ -1.5
ERCC4Q92889 HMGB3P9-201ENST00000441799 583 ntBASIC5.66□□□□□ -1.5
ERCC4Q92889 RPS11P7-201ENST00000442125 465 ntBASIC5.66□□□□□ -1.5
ERCC4Q92889 KATNBL1P6-201ENST00000453433 915 ntBASIC5.66□□□□□ -1.5
ERCC4Q92889 RPL5P32-201ENST00000454085 879 ntBASIC5.66□□□□□ -1.5
ERCC4Q92889 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC5.66□□□□□ -1.5
ERCC4Q92889 AC093899.1-201ENST00000457984 376 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms