Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
CHD3Q12873 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.34□□□□□ -1.88
CHD3Q12873 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
CHD3Q12873 MIR423-201ENST00000362201 94 ntBASIC3.34□□□□□ -1.88
CHD3Q12873 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC3.34□□□□□ -1.88
CHD3Q12873 MIR30B-201ENST00000384850 88 ntBASIC3.34□□□□□ -1.88
CHD3Q12873 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.34□□□□□ -1.88
CHD3Q12873 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.34□□□□□ -1.88
CHD3Q12873 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.34□□□□□ -1.88
CHD3Q12873 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.34□□□□□ -1.88
CHD3Q12873 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.34□□□□□ -1.88
CHD3Q12873 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC3.34□□□□□ -1.88
CHD3Q12873 AC104849.1-201ENST00000462623 405 ntBASIC3.34□□□□□ -1.88
CHD3Q12873 METTL15P1-201ENST00000481421 1045 ntBASIC3.34□□□□□ -1.88
CHD3Q12873 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC3.34□□□□□ -1.88
CHD3Q12873 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
CHD3Q12873 RNU1-103P-201ENST00000516502 125 ntBASIC3.34□□□□□ -1.88
CHD3Q12873 SCARNA14-201ENST00000516903 136 ntBASIC3.34□□□□□ -1.88
CHD3Q12873 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC3.34□□□□□ -1.88
CHD3Q12873 VTA1P2-201ENST00000520205 911 ntBASIC3.34□□□□□ -1.88
CHD3Q12873 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.34□□□□□ -1.88
CHD3Q12873 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.34□□□□□ -1.88
CHD3Q12873 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC3.34□□□□□ -1.88
CHD3Q12873 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
CHD3Q12873 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
CHD3Q12873 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHD3Q12873 AC093909.5-201ENST00000621839 1799 ntBASIC3.33□□□□□ -1.88
CHD3Q12873 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.33□□□□□ -1.88
CHD3Q12873 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHD3Q12873 SNORA60-201ENST00000362396 134 ntBASIC3.33□□□□□ -1.88
CHD3Q12873 AC092647.1-201ENST00000420654 287 ntBASIC3.33□□□□□ -1.88
CHD3Q12873 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.33□□□□□ -1.88
CHD3Q12873 AF228730.2-201ENST00000438784 848 ntBASIC3.33□□□□□ -1.88
CHD3Q12873 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.33□□□□□ -1.88
CHD3Q12873 RN7SL323P-201ENST00000494712 295 ntBASIC3.33□□□□□ -1.88
CHD3Q12873 RNU7-143P-201ENST00000516781 65 ntBASIC3.33□□□□□ -1.88
CHD3Q12873 AC090136.1-201ENST00000520009 240 ntBASIC3.33□□□□□ -1.88
CHD3Q12873 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.33□□□□□ -1.88
CHD3Q12873 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CHD3Q12873 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.33□□□□□ -1.88
CHD3Q12873 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
CHD3Q12873 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.33□□□□□ -1.88
CHD3Q12873 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHD3Q12873 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CHD3Q12873 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.33□□□□□ -1.88
CHD3Q12873 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHD3Q12873 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHD3Q12873 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHD3Q12873 Y_RNA.111-201ENST00000363248 100 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 MIR34B-201ENST00000385076 84 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 JKAMPP1-201ENST00000413804 919 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 USP12PY-201ENST00000427677 1064 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 RPS26P40-201ENST00000435209 294 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 OR9M1P-201ENST00000459641 921 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.32□□□□□ -1.88
CHD3Q12873 GMPSP1-201ENST00000514075 579 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 AC022695.1-201ENST00000522089 237 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 DEFB109D-201ENST00000529497 240 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.32□□□□□ -1.88
CHD3Q12873 AL109741.3-201ENST00000561748 592 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 AC015726.1-201ENST00000602353 681 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 AC005000.2-201ENST00000605468 310 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 AF001550.2-201ENST00000636643 217 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
CHD3Q12873 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.32□□□□□ -1.88
CHD3Q12873 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHD3Q12873 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHD3Q12873 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CHD3Q12873 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.32□□□□□ -1.88
CHD3Q12873 U1.1-201ENST00000384101 164 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 AC245052.5-201ENST00000416320 649 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CHD3Q12873 AC098799.1-201ENST00000504752 800 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 HSPD1P15-201ENST00000505573 1122 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 NDUFA5P2-201ENST00000519723 344 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.32□□□□□ -1.88
CHD3Q12873 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.32□□□□□ -1.88
CHD3Q12873 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.32□□□□□ -1.88
CHD3Q12873 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.32□□□□□ -1.88
CHD3Q12873 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CHD3Q12873 AC233309.1-201ENST00000619522 751 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.32□□□□□ -1.88
CHD3Q12873 MTND5P23-201ENST00000430812 1655 ntBASIC3.32□□□□□ -1.88
CHD3Q12873 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHD3Q12873 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC3.32□□□□□ -1.88
CHD3Q12873 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHD3Q12873 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHD3Q12873 AC006504.1-201ENST00000562493 3666 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CHD3Q12873 MIR1251-201ENST00000408552 70 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 RPS7P15-201ENST00000415804 584 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 PTP4A1P1-201ENST00000420539 515 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 NPM1P34-201ENST00000428821 893 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 HIGD1AP4-201ENST00000430194 280 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.31□□□□□ -1.88
CHD3Q12873 AC115115.1-201ENST00000449927 248 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 AL133244.1-201ENST00000456007 258 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 RN7SKP13-201ENST00000515933 244 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 RN7SKP18-201ENST00000516005 275 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms