Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX3P41225 PSMB7P1-201ENST00000556349 514 ntBASIC4.03□□□□□ -1.76
SOX3P41225 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX3P41225 MIR3939-201ENST00000582614 106 ntBASIC4.03□□□□□ -1.76
SOX3P41225 MIR3138-201ENST00000585238 82 ntBASIC4.03□□□□□ -1.76
SOX3P41225 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX3P41225 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.03□□□□□ -1.76
SOX3P41225 Z82195.1-201ENST00000604558 398 ntBASIC4.03□□□□□ -1.76
SOX3P41225 Z98200.1-201ENST00000607298 470 ntBASIC4.03□□□□□ -1.76
SOX3P41225 AC006946.3-201ENST00000609791 756 ntBASIC4.03□□□□□ -1.76
SOX3P41225 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.03□□□□□ -1.76
SOX3P41225 U6.48-201ENST00000618523 106 ntBASIC4.03□□□□□ -1.76
SOX3P41225 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC4.03□□□□□ -1.76
SOX3P41225 AC140479.6-201ENST00000633535 357 ntBASIC4.03□□□□□ -1.76
SOX3P41225 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.03□□□□□ -1.76
SOX3P41225 OR52H1-202ENST00000641796 1061 ntBASIC4.03□□□□□ -1.76
SOX3P41225 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
SOX3P41225 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.03□□□□□ -1.76
SOX3P41225 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
SOX3P41225 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC4.03□□□□□ -1.76
SOX3P41225 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SOX3P41225 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
SOX3P41225 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.02□□□□□ -1.77
SOX3P41225 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.02□□□□□ -1.77
SOX3P41225 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.02□□□□□ -1.77
SOX3P41225 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
SOX3P41225 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
SOX3P41225 OR52B1P-201ENST00000316506 909 ntBASIC4.02□□□□□ -1.77
SOX3P41225 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.02□□□□□ -1.77
SOX3P41225 SNORA70.2-201ENST00000364506 135 ntBASIC4.02□□□□□ -1.77
SOX3P41225 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.02□□□□□ -1.77
SOX3P41225 MIR1303-201ENST00000408625 86 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.02□□□□□ -1.77
SOX3P41225 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.02□□□□□ -1.77
SOX3P41225 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.02□□□□□ -1.77
SOX3P41225 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC4.02□□□□□ -1.77
SOX3P41225 AL590609.2-201ENST00000421430 368 ntBASIC4.02□□□□□ -1.77
SOX3P41225 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.02□□□□□ -1.77
SOX3P41225 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
SOX3P41225 AL031663.1-201ENST00000437445 219 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.02□□□□□ -1.77
SOX3P41225 AC002542.1-201ENST00000440683 193 ntBASIC4.02□□□□□ -1.77
SOX3P41225 MTCO1P53-201ENST00000441633 699 ntBASIC4.02□□□□□ -1.77
SOX3P41225 HMGB3P9-201ENST00000441799 583 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AL592437.1-201ENST00000443781 492 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.02□□□□□ -1.77
SOX3P41225 PTMAP3-201ENST00000447474 330 ntBASIC4.02□□□□□ -1.77
SOX3P41225 EXOSC3P1-201ENST00000448649 500 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.02□□□□□ -1.77
SOX3P41225 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.02□□□□□ -1.77
SOX3P41225 CDC42P1-201ENST00000456658 548 ntBASIC4.02□□□□□ -1.77
SOX3P41225 RPL6P9-201ENST00000466502 859 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AC010618.1-201ENST00000469924 477 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AC025445.1-201ENST00000502728 300 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AC119751.1-201ENST00000513357 765 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.02□□□□□ -1.77
SOX3P41225 RNU6-1028P-201ENST00000517164 93 ntBASIC4.02□□□□□ -1.77
SOX3P41225 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.02□□□□□ -1.77
SOX3P41225 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.02□□□□□ -1.77
SOX3P41225 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.02□□□□□ -1.77
SOX3P41225 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC4.02□□□□□ -1.77
SOX3P41225 OR5BC1P-201ENST00000529327 739 ntBASIC4.02□□□□□ -1.77
SOX3P41225 TRAV8-5-201ENST00000537369 341 ntBASIC4.02□□□□□ -1.77
SOX3P41225 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
SOX3P41225 AC087897.1-201ENST00000550134 156 ntBASIC4.02□□□□□ -1.77
SOX3P41225 PARP1P2-201ENST00000556806 195 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.02□□□□□ -1.77
SOX3P41225 AC124068.1-201ENST00000563131 678 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.02□□□□□ -1.77
SOX3P41225 AC069366.1-201ENST00000583159 838 ntBASIC4.02□□□□□ -1.77
SOX3P41225 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SOX3P41225 IPO5P1-202ENST00000600039 287 ntBASIC4.02□□□□□ -1.77
SOX3P41225 EIF1P6-201ENST00000600054 334 ntBASIC4.02□□□□□ -1.77
SOX3P41225 RPP40P2-201ENST00000603596 712 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AL590392.1-201ENST00000604960 446 ntBASIC4.02□□□□□ -1.77
SOX3P41225 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SOX3P41225 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.02□□□□□ -1.77
SOX3P41225 AC007546.2-201ENST00000623996 360 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AP002967.1-201ENST00000624203 539 ntBASIC4.02□□□□□ -1.77
SOX3P41225 AL121594.5-201ENST00000631724 573 ntBASIC4.02□□□□□ -1.77
SOX3P41225 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
SOX3P41225 MAPK10-253ENST00000641010 4072 ntBASIC4.02□□□□□ -1.77
SOX3P41225 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SOX3P41225 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
SOX3P41225 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
SOX3P41225 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.02□□□□□ -1.77
SOX3P41225 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SOX3P41225 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.02□□□□□ -1.77
SOX3P41225 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.01□□□□□ -1.77
SOX3P41225 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.01□□□□□ -1.77
SOX3P41225 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.01□□□□□ -1.77
SOX3P41225 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SOX3P41225 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.01□□□□□ -1.77
SOX3P41225 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
SOX3P41225 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SOX3P41225 ZNF962P-201ENST00000443465 3140 ntBASIC4.01□□□□□ -1.77
SOX3P41225 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SOX3P41225 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.01□□□□□ -1.77
SOX3P41225 RNA5SP307-201ENST00000362863 116 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms