Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 Z95331.1-201ENST00000623075 23112 ntBASIC5.11□□□□□ -1.59
MSX2P35548 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.11□□□□□ -1.59
MSX2P35548 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.11□□□□□ -1.59
MSX2P35548 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX2P35548 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.11□□□□□ -1.59
MSX2P35548 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
MSX2P35548 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
MSX2P35548 RNU4-76P-201ENST00000364509 141 ntBASIC5.11□□□□□ -1.59
MSX2P35548 SNORA62.2-201ENST00000364672 152 ntBASIC5.11□□□□□ -1.59
MSX2P35548 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC5.11□□□□□ -1.59
MSX2P35548 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSX2P35548 SNORA48.4-201ENST00000391089 134 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AC092642.1-201ENST00000392417 425 ntBASIC5.11□□□□□ -1.59
MSX2P35548 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
MSX2P35548 RPS3AP23-201ENST00000401762 784 ntBASIC5.11□□□□□ -1.59
MSX2P35548 HMGB3P23-201ENST00000414981 585 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AIMP1P1-201ENST00000418670 937 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX2P35548 AC233728.2-201ENST00000425348 757 ntBASIC5.11□□□□□ -1.59
MSX2P35548 RWDD4P2-201ENST00000426392 563 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.11□□□□□ -1.59
MSX2P35548 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX2P35548 PPIAP17-201ENST00000438507 471 ntBASIC5.11□□□□□ -1.59
MSX2P35548 FHP1-201ENST00000442741 703 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.11□□□□□ -1.59
MSX2P35548 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC5.11□□□□□ -1.59
MSX2P35548 GDI2P2-201ENST00000445131 608 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC5.11□□□□□ -1.59
MSX2P35548 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX2P35548 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.11□□□□□ -1.59
MSX2P35548 AC112206.1-201ENST00000468416 477 ntBASIC5.11□□□□□ -1.59
MSX2P35548 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.11□□□□□ -1.59
MSX2P35548 RPL7AP10-201ENST00000481016 791 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AC018797.1-201ENST00000510791 255 ntBASIC5.11□□□□□ -1.59
MSX2P35548 RNA5SP135-201ENST00000517019 125 ntBASIC5.11□□□□□ -1.59
MSX2P35548 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX2P35548 RAB11AP2-201ENST00000545905 639 ntBASIC5.11□□□□□ -1.59
MSX2P35548 GLYCAM1-201ENST00000546596 285 ntBASIC5.11□□□□□ -1.59
MSX2P35548 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX2P35548 AC026826.3-201ENST00000561747 158 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AC091489.2-201ENST00000566263 604 ntBASIC5.11□□□□□ -1.59
MSX2P35548 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.11□□□□□ -1.59
MSX2P35548 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX2P35548 AC136618.2-201ENST00000575091 400 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.11□□□□□ -1.59
MSX2P35548 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC5.11□□□□□ -1.59
MSX2P35548 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC5.11□□□□□ -1.59
MSX2P35548 AC015982.1-201ENST00000608113 465 ntBASIC5.11□□□□□ -1.59
MSX2P35548 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC5.11□□□□□ -1.59
MSX2P35548 AC055764.2-201ENST00000610089 670 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX2P35548 MIR6839-201ENST00000620425 113 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AC124864.2-201ENST00000624736 186 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC5.11□□□□□ -1.59
MSX2P35548 AC129915.3-201ENST00000634128 948 ntBASIC5.11□□□□□ -1.59
MSX2P35548 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX2P35548 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.11□□□□□ -1.59
MSX2P35548 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
MSX2P35548 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSX2P35548 AP002001.2-201ENST00000529025 1469 ntBASIC5.11□□□□□ -1.59
MSX2P35548 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX2P35548 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSX2P35548 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSX2P35548 AC000374.1-201ENST00000434698 1745 ntBASIC5.11□□□□□ -1.59
MSX2P35548 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.11□□□□□ -1.59
MSX2P35548 AC092079.1-201ENST00000558620 1985 ntBASIC5.11□□□□□ -1.59
MSX2P35548 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.11□□□□□ -1.59
MSX2P35548 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSX2P35548 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
MSX2P35548 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX2P35548 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
MSX2P35548 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX2P35548 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX2P35548 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSX2P35548 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSX2P35548 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX2P35548 Y_RNA.9-201ENST00000362354 101 ntBASIC5.1□□□□□ -1.59
MSX2P35548 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.1□□□□□ -1.59
MSX2P35548 MIR1303-201ENST00000408625 86 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
MSX2P35548 AC048351.1-201ENST00000420064 602 ntBASIC5.1□□□□□ -1.59
MSX2P35548 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX2P35548 AC012498.1-201ENST00000424037 437 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AC007559.1-201ENST00000428736 355 ntBASIC5.1□□□□□ -1.59
MSX2P35548 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.1□□□□□ -1.59
MSX2P35548 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC5.1□□□□□ -1.59
MSX2P35548 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 PDSS1P2-201ENST00000449397 678 ntBASIC5.1□□□□□ -1.59
MSX2P35548 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 PSPHP1-201ENST00000450062 261 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AL935212.3-201ENST00000450729 284 ntBASIC5.1□□□□□ -1.59
MSX2P35548 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
MSX2P35548 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.1□□□□□ -1.59
MSX2P35548 UBDP1-202ENST00000457888 382 ntBASIC5.1□□□□□ -1.59
MSX2P35548 AC023194.2-201ENST00000465398 406 ntBASIC5.1□□□□□ -1.59
MSX2P35548 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms