Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC6.18□□□□□ -1.42
MSX1P28360 MGST1-215ENST00000540056 546 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX1P28360 AP000763.2-201ENST00000540641 163 ntBASIC6.18□□□□□ -1.42
MSX1P28360 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX1P28360 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
MSX1P28360 AC128657.1-201ENST00000549459 145 ntBASIC6.18□□□□□ -1.42
MSX1P28360 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX1P28360 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX1P28360 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX1P28360 MIR4310-201ENST00000582950 57 ntBASIC6.18□□□□□ -1.42
MSX1P28360 MIR212-201ENST00000586026 110 ntBASIC6.18□□□□□ -1.42
MSX1P28360 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX1P28360 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX1P28360 AC062037.2-201ENST00000610137 73 ntBASIC6.18□□□□□ -1.42
MSX1P28360 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 SNORA16A-202ENST00000628458 135 ntBASIC6.18□□□□□ -1.42
MSX1P28360 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX1P28360 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.18□□□□□ -1.42
MSX1P28360 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC6.18□□□□□ -1.42
MSX1P28360 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX1P28360 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.18□□□□□ -1.42
MSX1P28360 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX1P28360 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX1P28360 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 MTND5P30-201ENST00000452896 1731 ntBASIC6.17□□□□□ -1.42
MSX1P28360 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.17□□□□□ -1.42
MSX1P28360 Y_RNA.80-201ENST00000362996 102 ntBASIC6.17□□□□□ -1.42
MSX1P28360 RNU6-1252P-201ENST00000363054 104 ntBASIC6.17□□□□□ -1.42
MSX1P28360 SNORA62.1-201ENST00000364287 154 ntBASIC6.17□□□□□ -1.42
MSX1P28360 RNU6-99P-201ENST00000364721 107 ntBASIC6.17□□□□□ -1.42
MSX1P28360 SNORA51.6-201ENST00000384151 125 ntBASIC6.17□□□□□ -1.42
MSX1P28360 AC016769.3-201ENST00000396562 315 ntBASIC6.17□□□□□ -1.42
MSX1P28360 RNA5SP155-201ENST00000411154 129 ntBASIC6.17□□□□□ -1.42
MSX1P28360 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX1P28360 AC000089.1-201ENST00000424559 801 ntBASIC6.17□□□□□ -1.42
MSX1P28360 AC008267.5-201ENST00000424928 265 ntBASIC6.17□□□□□ -1.42
MSX1P28360 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX1P28360 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
MSX1P28360 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC6.17□□□□□ -1.42
MSX1P28360 RPL23AP28-201ENST00000448062 470 ntBASIC6.17□□□□□ -1.42
MSX1P28360 OR7E116P-201ENST00000448529 957 ntBASIC6.17□□□□□ -1.42
MSX1P28360 MTND1P17-201ENST00000448961 204 ntBASIC6.17□□□□□ -1.42
MSX1P28360 AP000893.1-201ENST00000474462 794 ntBASIC6.17□□□□□ -1.42
MSX1P28360 AC015524.1-201ENST00000491585 472 ntBASIC6.17□□□□□ -1.42
MSX1P28360 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX1P28360 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX1P28360 AC008638.1-201ENST00000506035 866 ntBASIC6.17□□□□□ -1.42
MSX1P28360 AC096754.1-201ENST00000508904 818 ntBASIC6.17□□□□□ -1.42
MSX1P28360 EIF3KP3-201ENST00000514461 639 ntBASIC6.17□□□□□ -1.42
MSX1P28360 RNU6-256P-201ENST00000516747 97 ntBASIC6.17□□□□□ -1.42
MSX1P28360 IGKV2D-38-201ENST00000518423 240 ntBASIC6.17□□□□□ -1.42
MSX1P28360 SNRPCP6-201ENST00000528310 210 ntBASIC6.17□□□□□ -1.42
MSX1P28360 AC125612.1-201ENST00000547580 377 ntBASIC6.17□□□□□ -1.42
MSX1P28360 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
MSX1P28360 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.17□□□□□ -1.42
MSX1P28360 AC004232.1-201ENST00000571388 208 ntBASIC6.17□□□□□ -1.42
MSX1P28360 AC053481.3-201ENST00000577881 843 ntBASIC6.17□□□□□ -1.42
MSX1P28360 CTSLP2-201ENST00000580501 394 ntBASIC6.17□□□□□ -1.42
MSX1P28360 MIR3672-201ENST00000584290 82 ntBASIC6.17□□□□□ -1.42
MSX1P28360 BNIP3P16-201ENST00000589779 534 ntBASIC6.17□□□□□ -1.42
MSX1P28360 RPS11-205ENST00000599561 430 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX1P28360 Z82243.1-201ENST00000609432 473 ntBASIC6.17□□□□□ -1.42
MSX1P28360 AC006157.1-201ENST00000611750 366 ntBASIC6.17□□□□□ -1.42
MSX1P28360 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX1P28360 uc_338.34-201ENST00000617467 174 ntBASIC6.17□□□□□ -1.42
MSX1P28360 PLCE1P1-201ENST00000622094 305 ntBASIC6.17□□□□□ -1.42
MSX1P28360 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6.17□□□□□ -1.42
MSX1P28360 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC6.17□□□□□ -1.42
MSX1P28360 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.17□□□□□ -1.42
MSX1P28360 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX1P28360 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC6.17□□□□□ -1.42
MSX1P28360 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX1P28360 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX1P28360 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX1P28360 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
MSX1P28360 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
MSX1P28360 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC6.16□□□□□ -1.42
MSX1P28360 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSX1P28360 MRE11P1-201ENST00000464884 2127 ntBASIC6.16□□□□□ -1.42
MSX1P28360 AC093278.2-201ENST00000564956 2485 ntBASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms