Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNU6-1017P-201ENST00000363613 106 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 Y_RNA.506-201ENST00000384494 102 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 RNU6-903P-201ENST00000391270 109 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 PCNPP3-201ENST00000393579 471 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC5.85□□□□□ -1.47
COL8A1P27658 RNA5SP178-201ENST00000410380 128 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 RNU4-25P-201ENST00000410569 230 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 RPL7AP14-201ENST00000424041 802 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 GAPDHP57-201ENST00000424400 585 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 KRTAP3-4P-201ENST00000430780 280 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.85□□□□□ -1.47
COL8A1P27658 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC5.85□□□□□ -1.47
COL8A1P27658 AL161636.2-201ENST00000445179 927 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.85□□□□□ -1.47
COL8A1P27658 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC5.85□□□□□ -1.47
COL8A1P27658 AC002486.2-201ENST00000447806 590 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC5.85□□□□□ -1.47
COL8A1P27658 AC092647.2-201ENST00000452998 253 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC5.85□□□□□ -1.47
COL8A1P27658 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC5.85□□□□□ -1.47
COL8A1P27658 RN7SL180P-201ENST00000466769 294 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 AC007998.1-201ENST00000474156 672 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.85□□□□□ -1.47
COL8A1P27658 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC5.85□□□□□ -1.47
COL8A1P27658 AC079080.1-201ENST00000479841 822 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.85□□□□□ -1.47
COL8A1P27658 AP002453.1-201ENST00000492327 668 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL8A1P27658 SNX18P24-201ENST00000505249 671 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 RNU6-1016P-201ENST00000516689 94 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 RN7SKP92-201ENST00000517266 244 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.85□□□□□ -1.47
COL8A1P27658 AP002770.2-201ENST00000543613 532 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 HMGB3P26-201ENST00000560051 582 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.85□□□□□ -1.47
COL8A1P27658 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC5.85□□□□□ -1.47
COL8A1P27658 AL035410.2-201ENST00000604963 864 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 AL008729.2-201ENST00000606393 473 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 SDR42E1P1-201ENST00000611327 477 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 CR381572.1-201ENST00000625098 102 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 AC129915.3-201ENST00000634128 948 ntBASIC5.85□□□□□ -1.47
COL8A1P27658 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC5.85□□□□□ -1.47
COL8A1P27658 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
COL8A1P27658 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL8A1P27658 AC116366.1-201ENST00000443093 3730 ntTSL 5 BASIC5.85□□□□□ -1.47
COL8A1P27658 LRTOMT-210ENST00000447974 2007 ntTSL 2 BASIC5.85□□□□□ -1.47
COL8A1P27658 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL8A1P27658 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC5.85□□□□□ -1.47
COL8A1P27658 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC5.85□□□□□ -1.47
COL8A1P27658 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL8A1P27658 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL8A1P27658 PSMD6-AS2-201ENST00000472046 2456 ntTSL 2 BASIC5.85□□□□□ -1.47
COL8A1P27658 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC5.85□□□□□ -1.47
COL8A1P27658 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL8A1P27658 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC5.85□□□□□ -1.47
COL8A1P27658 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC5.84□□□□□ -1.47
COL8A1P27658 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.84□□□□□ -1.47
COL8A1P27658 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
COL8A1P27658 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
COL8A1P27658 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC5.84□□□□□ -1.47
COL8A1P27658 BCL2L14-211ENST00000586576 1927 ntTSL 5 BASIC5.84□□□□□ -1.47
COL8A1P27658 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL8A1P27658 AL139276.1-201ENST00000311910 1001 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 OR56A5-201ENST00000340110 738 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 RNU6-545P-201ENST00000362681 104 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 Y_RNA.367-201ENST00000365544 101 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 DSTNP4-201ENST00000399472 474 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 OR6C66P-201ENST00000414917 930 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 UBE2FP1-201ENST00000416536 447 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 AC048351.1-201ENST00000420064 602 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 AC137499.1-201ENST00000427602 88 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 MTND6P12-201ENST00000428247 522 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 RPS20P5-201ENST00000434808 360 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 AC093716.1-201ENST00000435923 377 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 AL138799.3-201ENST00000438968 350 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.84□□□□□ -1.47
COL8A1P27658 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.84□□□□□ -1.47
COL8A1P27658 AC073910.1-201ENST00000445047 438 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.84□□□□□ -1.47
COL8A1P27658 UBBP5-201ENST00000446970 266 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 RPL31P44-201ENST00000447680 377 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 AC112492.4-201ENST00000456549 352 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 RN7SL515P-201ENST00000463999 297 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 RPL7L1P8-201ENST00000469911 741 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 Y_RNA.654-201ENST00000497848 106 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC5.84□□□□□ -1.47
COL8A1P27658 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.84□□□□□ -1.47
COL8A1P27658 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
COL8A1P27658 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC5.84□□□□□ -1.47
COL8A1P27658 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC5.84□□□□□ -1.47
COL8A1P27658 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.84□□□□□ -1.47
COL8A1P27658 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC5.84□□□□□ -1.47
COL8A1P27658 AC008507.3-201ENST00000585753 472 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.84□□□□□ -1.47
COL8A1P27658 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.84□□□□□ -1.47
COL8A1P27658 Z98751.3-201ENST00000604447 521 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC5.84□□□□□ -1.47
COL8A1P27658 AC024884.1-201ENST00000620583 399 ntBASIC5.84□□□□□ -1.47
COL8A1P27658 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms