Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AC011978.2-201ENST00000569835 2054 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AL592494.2-201ENST00000425455 1548 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 MTCO1P6-201ENST00000481192 1384 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 RNU1-132P-201ENST00000364300 164 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 RNU6-481P-201ENST00000384194 107 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AL445183.3-201ENST00000414168 502 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 RPL31P45-201ENST00000419532 356 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AL451062.2-201ENST00000427515 271 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AL132765.1-201ENST00000434165 553 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AC002542.1-201ENST00000440683 193 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AC009263.1-201ENST00000441193 1239 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 DHFRP3-201ENST00000455595 559 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AC034236.1-201ENST00000469891 373 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 RPL21P103-201ENST00000479921 488 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 PTP4A1P6-201ENST00000531034 478 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AP000919.1-202ENST00000581139 1264 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AP001180.3-201ENST00000582221 145 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 VN1R88P-201ENST00000596787 292 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AC083899.3-201ENST00000603413 594 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AC105429.2-201ENST00000610567 517 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 AC103798.2-201ENST00000624292 632 ntBASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.33□□□□□ -1.72
PCDHGA1Q9Y5H4 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 CPHL1P-201ENST00000461341 3407 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 RNA5SP391-201ENST00000363456 119 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 RNU1-130P-201ENST00000363930 160 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 U3.15-201ENST00000365398 212 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AL603766.1-201ENST00000407763 664 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 RN7SKP202-201ENST00000410439 330 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 RN7SKP177-201ENST00000410567 355 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 COX6CP15-201ENST00000426313 211 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AL158053.1-201ENST00000441503 453 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 RPL23AP43-201ENST00000446445 471 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC008280.2-201ENST00000455473 307 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC010374.1-201ENST00000503762 1237 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC005868.1-201ENST00000536421 331 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC135001.1-201ENST00000544546 283 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 CENPUP2-201ENST00000555897 1186 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AGGF1P6-201ENST00000569213 976 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC140479.6-201ENST00000633535 357 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AC068254.2-201ENST00000623938 3577 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AL391684.1-202ENST00000641293 1636 ntBASIC4.32□□□□□ -1.72
PCDHGA1Q9Y5H4 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms