Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 MTCYBP13-201ENST00000578634 1093 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 BNIP3P22-201ENST00000593399 556 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AC116312.1-201ENST00000606841 314 ntBASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 USP45-204ENST00000369233 2514 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC39Q9UFE4 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 TRIM51GP-201ENST00000534741 1350 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 MT-RNR2-201ENST00000387347 1559 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 MTCO3P40-201ENST00000392516 676 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 CALM2P3-201ENST00000400429 449 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 HMGB1P20-201ENST00000402555 677 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 RPL21P67-201ENST00000402896 478 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 MTCO2P12-201ENST00000427426 682 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 FGF12-202ENST00000430714 603 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AC244505.5-201ENST00000443639 207 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 HMGN1P2-201ENST00000445197 310 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 USP9YP12-201ENST00000450481 570 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AL445665.1-202ENST00000452436 324 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 VDAC2P4-201ENST00000452925 711 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 RPS23P6-201ENST00000466136 431 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 RN7SL188P-201ENST00000469842 285 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 OARD1-211ENST00000480585 829 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AC011352.3-201ENST00000505162 593 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 RNU6-615P-201ENST00000516065 106 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 MRPS16P1-201ENST00000523462 412 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AF235103.2-201ENST00000525753 346 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AC005363.1-201ENST00000530779 351 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 PRPF19P1-201ENST00000584766 898 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AC005021.1-201ENST00000608730 355 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AL731532.2-201ENST00000623542 1953 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AC068870.1-201ENST00000563737 2455 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 AL034549.2-201ENST00000618285 3373 ntBASIC6.31□□□□□ -1.4
CCDC39Q9UFE4 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AL590763.1-201ENST00000398297 1545 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AL138820.1-201ENST00000617901 5305 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 SYF2-202ENST00000354361 926 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 SNORA4.1-201ENST00000364263 144 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 ESD-201ENST00000378697 1079 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 PIGPP2-201ENST00000411569 458 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 RIMKLBP2-201ENST00000424737 654 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AL121776.1-201ENST00000429337 372 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 SPRYD7P1-201ENST00000443861 570 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 SNORD42A-201ENST00000459584 64 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 ACTR3BP4-201ENST00000503033 1244 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AC026427.2-201ENST00000506228 536 ntBASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms