Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 RNA5SP123-201ENST00000363244 119 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 RNU6-1339P-201ENST00000363574 91 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 CYCSP10-201ENST00000417973 294 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 RPS12P5-201ENST00000423449 371 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 MTCO1P3-201ENST00000429327 192 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 USP9YP31-201ENST00000431405 881 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 RPL7P29-201ENST00000437151 728 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC009263.1-201ENST00000441193 1239 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 IGHV5-78-201ENST00000450948 295 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC091180.1-201ENST00000462104 372 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC007537.2-201ENST00000472093 511 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 RN7SL817P-201ENST00000480777 288 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC010350.1-201ENST00000504908 231 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 WBP1LP4-201ENST00000505043 344 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 UBE2NP1-201ENST00000545592 458 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC068714.1-201ENST00000559623 800 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC012213.3-201ENST00000577199 777 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 MIR4330-201ENST00000579077 105 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 EIF1P6-201ENST00000600054 334 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AP001981.2-201ENST00000603241 418 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC069545.1-201ENST00000605671 358 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC018695.5-201ENST00000605872 315 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 MIR378J-201ENST00000611988 109 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC121761.2-201ENST00000617300 689 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC022106.2-201ENST00000620114 757 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AL353662.3-201ENST00000625131 237 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AL445487.1-201ENST00000415694 1580 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 ECM1P2-201ENST00000503354 1577 ntBASIC5.08□□□□□ -1.6
DKK3Q9UBP4 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.08□□□□□ -1.6
DKK3Q9UBP4 AC100871.1-201ENST00000507871 1456 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 CASC19-284ENST00000642142 1868 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 ANKRD20A17P-201ENST00000511745 1330 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 LINC01109-201ENST00000603837 3081 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 AL391994.1-201ENST00000254724 282 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 OR56B2P-201ENST00000317102 954 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 SNORA77-201ENST00000408716 125 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 RNU6-575P-201ENST00000411326 105 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 RPL12P9-201ENST00000412942 488 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 AC004690.1-201ENST00000418216 328 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 AC019050.1-201ENST00000418508 492 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 GAPDHP49-201ENST00000421421 961 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 AC245028.1-201ENST00000423259 256 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 AL353706.1-201ENST00000436728 494 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 TAF9P1-201ENST00000445421 515 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 MTND2P19-201ENST00000449129 1012 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 RHEBP2-201ENST00000450289 600 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 TAF9P2-201ENST00000454958 515 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC5.07□□□□□ -1.6
DKK3Q9UBP4 GAPDHP36-201ENST00000480688 918 ntBASIC5.07□□□□□ -1.6
DKK3Q9UBP4 AC140172.1-201ENST00000502928 141 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms