Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 MIR1183-201ENST00000408856 89 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC092832.1-201ENST00000422934 400 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC093698.1-201ENST00000423843 571 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 YY1P1-201ENST00000427625 668 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 HSFY6P-201ENST00000445573 403 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 HMGB1P16-201ENST00000447155 540 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 CYCSP53-201ENST00000455540 265 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC005229.2-201ENST00000456995 399 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AL133477.1-201ENST00000457472 514 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC018635.1-201ENST00000468292 1030 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC087385.1-201ENST00000475062 312 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC005798.1-201ENST00000513715 387 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 SCARNA14-201ENST00000516903 136 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 RNU6-352P-201ENST00000516908 107 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 MIR4644-201ENST00000579929 84 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC005255.1-201ENST00000593748 216 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC020914.4-201ENST00000597690 277 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 SNORA62.6-201ENST00000606322 83 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 AC138393.1-206ENST00000540997 1886 ntBASIC3.81□□□□□ -1.8
TREX1Q9NSU2 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
TREX1Q9NSU2 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 AC025125.1-201ENST00000624743 1922 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 SNORA70.2-201ENST00000364506 135 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 Y_RNA.625-201ENST00000411256 107 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 AJ239321.1-201ENST00000424255 564 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 OR9M1P-201ENST00000459641 921 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 AC068305.1-201ENST00000497406 726 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 AC146944.2-203ENST00000502493 354 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 AC139495.1-202ENST00000513164 354 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 RN7SKP209-201ENST00000516888 304 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 TBCA-203ENST00000517679 545 ntTSL 3 BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 AC136624.4-201ENST00000573044 370 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 AC016957.2-201ENST00000616998 848 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
TREX1Q9NSU2 SPATA2P1-201ENST00000431223 2055 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 EXOC5P1-201ENST00000510543 1969 ntBASIC3.8□□□□□ -1.8
TREX1Q9NSU2 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 AC083899.2-201ENST00000423285 1376 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 MAPK10-373ENST00000641983 6772 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 RNA5SP283-201ENST00000365604 119 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 SOD2P1-201ENST00000396543 562 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 PPIAP31-201ENST00000405422 495 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 ZNF602P-201ENST00000405929 924 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 HSPE1P8-201ENST00000406997 288 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 LSM5-205ENST00000409952 687 ntTSL 4 BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 COX6CP17-201ENST00000421389 185 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 HIGD1AP12-201ENST00000427832 281 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 RPS27AP12-201ENST00000429552 465 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 MTCO1P45-201ENST00000431457 267 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 MTCYBP29-201ENST00000436327 1006 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 RPL7P28-201ENST00000437739 740 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 TPT1P12-201ENST00000448968 492 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.79□□□□□ -1.8
TREX1Q9NSU2 AC023050.1-201ENST00000498198 304 ntBASIC3.79□□□□□ -1.8
TREX1Q9NSU2 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms