Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 MIR16-1-201ENST00000385271 89 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 RNU6-837P-201ENST00000391056 108 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 MTCO2P31-201ENST00000402702 684 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 ELOCP19-201ENST00000411919 318 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AC069213.2-201ENST00000420238 366 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 RAD23BP1-201ENST00000421404 1227 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AL356387.2-201ENST00000422272 243 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AC005517.2-201ENST00000424673 553 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 B3GNT2P1-201ENST00000434960 952 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 YWHAZP8-201ENST00000436935 731 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 MTND2P28-201ENST00000457540 1044 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AP001086.1-201ENST00000494882 321 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 ATP1B1P1-201ENST00000509767 915 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AC138938.1-201ENST00000515431 782 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 RNU6-202P-201ENST00000515998 96 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AC090281.1-201ENST00000523019 276 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AC012531.5-201ENST00000611375 151 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AC006065.6-201ENST00000625201 545 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 AL731566.1-201ENST00000620490 1937 ntBASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.85□□□□□ -1.47
CHMP4AQ9BY43 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 ZNF734P-201ENST00000419494 1534 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 MTND5P31-201ENST00000419366 1374 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 MIR607-201ENST00000385241 96 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 SNORD65C-201ENST00000390962 71 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AL121978.1-201ENST00000402778 359 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AL121834.1-202ENST00000404494 277 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AL807761.1-201ENST00000417622 171 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 PAICSP7-201ENST00000419829 962 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 RPL23AP25-201ENST00000430973 463 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AC010881.1-201ENST00000433830 235 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AL138799.3-201ENST00000438968 350 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AL050341.1-201ENST00000447743 313 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 VN1R32P-201ENST00000452234 905 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 RPS20P32-201ENST00000456044 356 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 RPL12P25-202ENST00000598100 674 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 RNF138P2-201ENST00000603490 592 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AL512506.1-201ENST00000613918 449 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AL121873.1-201ENST00000616013 524 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AC068722.2-201ENST00000618734 544 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 AC106730.3-201ENST00000624568 641 ntBASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC5.84□□□□□ -1.47
CHMP4AQ9BY43 CPHL1P-201ENST00000461341 3407 ntBASIC5.84□□□□□ -1.48
CHMP4AQ9BY43 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
CHMP4AQ9BY43 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
CHMP4AQ9BY43 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
CHMP4AQ9BY43 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 RAD17P1-201ENST00000418130 2042 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 SNORA51.2-201ENST00000364595 132 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 LIPT1P1-201ENST00000415870 1186 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 PTP4A1P5-201ENST00000420305 455 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AC062016.2-201ENST00000420950 676 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 DEFB130D-201ENST00000426866 237 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 AL158053.1-201ENST00000441503 453 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 RPL21P104-201ENST00000464143 478 ntBASIC5.83□□□□□ -1.48
CHMP4AQ9BY43 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms