Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS13AQ96RL7 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AC005189.1-201ENST00000431286 310 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AF228730.2-201ENST00000438784 848 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 FAM172BP-201ENST00000487497 1089 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 UBA52P3-201ENST00000491303 382 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 U3.39-201ENST00000408569 239 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AC010655.1-201ENST00000449336 292 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 VN1R40P-201ENST00000455196 941 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AL645568.2-201ENST00000432815 1337 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AL139413.1-201ENST00000421309 217 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 SDCBPP2-201ENST00000424643 885 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 NDUFB1P1-201ENST00000435191 180 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 ATP5C1P1-201ENST00000441945 895 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 MIR4435-1-201ENST00000582552 80 ntBASIC3.37□□□□□ -1.87
VPS13AQ96RL7 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
VPS13AQ96RL7 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 AP000641.1-201ENST00000531988 1639 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 MIR504-201ENST00000385065 83 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 AL353705.1-201ENST00000433468 480 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 NPM1P48-201ENST00000436002 853 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 AC138938.1-201ENST00000515431 782 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 RNU6-579P-201ENST00000516879 102 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 AL133247.2-201ENST00000603236 482 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 AC018692.3-201ENST00000623929 123 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 TNPO1P3-201ENST00000436471 2662 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 BMS1P22-201ENST00000414726 313 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 Z93242.1-201ENST00000427102 353 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 ATP5HP2-201ENST00000433885 485 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 RPS20P1-201ENST00000434853 354 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 SUMO2P20-201ENST00000520803 283 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 MIR4524B-201ENST00000581569 115 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 SLC25A36P1-201ENST00000590111 465 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 AC231759.1-201ENST00000616455 597 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 CYCSP41-201ENST00000616920 296 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.36□□□□□ -1.87
VPS13AQ96RL7 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS13AQ96RL7 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC105074.1-201ENST00000623380 3095 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 NPM1P37-201ENST00000403105 874 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC073508.1-201ENST00000428866 656 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC138832.1-201ENST00000522871 556 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.35□□□□□ -1.87
VPS13AQ96RL7 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS13AQ96RL7 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms