Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC139103.1-201ENST00000534696 1030 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 Z98200.1-201ENST00000607298 470 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 RNU4-89P-201ENST00000607443 133 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AP002360.3-201ENST00000607673 710 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AP001033.2-201ENST00000609701 1003 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AL354696.1-201ENST00000614652 497 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AC023509.5-201ENST00000617434 807 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AC007546.1-201ENST00000619452 559 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AC140113.4-201ENST00000622087 222 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AC007546.2-201ENST00000623996 360 ntBASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HDDC3Q8N4P3 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.34□□□□□ -1.72
HDDC3Q8N4P3 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
HDDC3Q8N4P3 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.72
HDDC3Q8N4P3 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HDDC3Q8N4P3 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.72
HDDC3Q8N4P3 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 ZNF33CP-201ENST00000432492 2030 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 MTCO1P18-201ENST00000455518 1419 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 RNU1-14P-201ENST00000362759 152 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 RNA5SP307-201ENST00000362863 116 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 MIR153-1-201ENST00000384914 90 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 RN7SKP235-201ENST00000410662 305 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 MORF4L1P7-201ENST00000426038 703 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 RPS6P12-201ENST00000432491 726 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC007389.2-201ENST00000434630 306 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 RPL21P89-201ENST00000444021 467 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 HMGB1P48-201ENST00000446155 598 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC068135.1-201ENST00000446164 246 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 RPL37P6-202ENST00000464216 403 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 RPL7P22-201ENST00000466005 733 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 RPS20P21-201ENST00000466859 343 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC018635.1-201ENST00000468292 1030 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC146944.2-203ENST00000502493 354 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 KCTD9P2-201ENST00000512203 1013 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC139495.1-202ENST00000513164 354 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 SETP12-201ENST00000514068 805 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 MIR4444-1-201ENST00000581696 74 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 MIR4444-2-201ENST00000584390 74 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC125494.3-201ENST00000602759 455 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC113194.1-201ENST00000606037 500 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC105429.2-201ENST00000610567 517 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 MIR6875-201ENST00000617506 72 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC067931.1-201ENST00000624190 671 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 HPVC1-201ENST00000629899 1198 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AL356489.2-201ENST00000566968 3528 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 AC087190.4-201ENST00000574616 8334 ntBASIC4.33□□□□□ -1.72
HDDC3Q8N4P3 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 SNORA70.4-201ENST00000365509 134 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 EIF1P3-201ENST00000423841 334 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 ARL4AP3-201ENST00000441452 574 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 SNORD108-201ENST00000459332 71 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 RPL23AP65-201ENST00000475608 468 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 RPL21P103-201ENST00000479921 488 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 RPS27AP13-201ENST00000498403 237 ntBASIC4.32□□□□□ -1.72
HDDC3Q8N4P3 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms