Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC103706.2-201ENST00000638080 240 ntBASIC4.03□□□□□ -1.76
HOXA1P49639 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA1P49639 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HOXA1P49639 AC027287.1-201ENST00000553115 1453 ntBASIC4.03□□□□□ -1.76
HOXA1P49639 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXA1P49639 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA1P49639 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA1P49639 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.03□□□□□ -1.77
HOXA1P49639 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA1P49639 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA1P49639 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC4.02□□□□□ -1.77
HOXA1P49639 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA1P49639 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA1P49639 AC235565.1-201ENST00000456962 1325 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
HOXA1P49639 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA1P49639 RNU1-83P-201ENST00000363426 164 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
HOXA1P49639 SNORA70-201ENST00000384436 135 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 MIR1182-201ENST00000408363 97 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 MIR1183-201ENST00000408856 89 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 TEX41-202ENST00000414256 604 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA1P49639 QRSL1P2-201ENST00000418582 964 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC016907.1-201ENST00000419483 435 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC090960.1-201ENST00000421072 306 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 EI24P4-201ENST00000423683 1078 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 CNOT7P1-201ENST00000429006 852 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 MTCO1P54-201ENST00000430139 712 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 RPL7P4-203ENST00000430239 730 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 RPS29P14-201ENST00000431518 171 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC092162.1-201ENST00000432828 434 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA1P49639 RAB11AP1-201ENST00000442978 646 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXA1P49639 AL354714.3-201ENST00000447284 493 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 RPL7P59-201ENST00000447700 943 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC243772.1-201ENST00000451620 410 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 RPL7P6-201ENST00000480903 738 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC108734.3-201ENST00000481241 1165 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC082651.2-201ENST00000496833 166 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AL136038.1-201ENST00000497246 351 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 AC020593.1-201ENST00000507399 299 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
HOXA1P49639 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
HOXA1P49639 RNU6-885P-201ENST00000516607 104 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 IGHV3-32-201ENST00000519182 355 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA1P49639 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA1P49639 ELOCP32-201ENST00000548625 324 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXA1P49639 AP005136.1-201ENST00000579765 429 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 MIR4644-201ENST00000579929 84 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA1P49639 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA1P49639 DPRXP5-201ENST00000604662 539 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA1P49639 AL451074.6-201ENST00000608512 729 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 AC109309.2-201ENST00000612597 332 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC009318.3-201ENST00000616916 503 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC019206.1-201ENST00000621938 425 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AL512506.2-201ENST00000624472 458 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC010608.2-201ENST00000624830 470 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.02□□□□□ -1.77
HOXA1P49639 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA1P49639 OR2L1P-202ENST00000641567 1023 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
HOXA1P49639 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA1P49639 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
HOXA1P49639 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA1P49639 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA1P49639 AP000776.1-201ENST00000530032 1663 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
HOXA1P49639 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA1P49639 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
HOXA1P49639 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
HOXA1P49639 AC016588.2-201ENST00000632484 3021 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AL355852.1-201ENST00000454081 1771 ntBASIC4.02□□□□□ -1.77
HOXA1P49639 AC010329.2-201ENST00000595195 2737 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA1P49639 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA1P49639 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
HOXA1P49639 ZNF736P9Y-201ENST00000439586 1345 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 ZNF542P-204ENST00000482727 1305 ntBASIC4.01□□□□□ -1.77
HOXA1P49639 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA1P49639 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA1P49639 HMGB1P5-201ENST00000255320 642 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms