Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
CUX1P39880 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CUX1P39880 U3.19-201ENST00000390893 196 ntBASIC5.87□□□□□ -1.47
CUX1P39880 AP001992.1-205ENST00000462248 379 ntBASIC5.87□□□□□ -1.47
CUX1P39880 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.87□□□□□ -1.47
CUX1P39880 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC5.87□□□□□ -1.47
CUX1P39880 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
CUX1P39880 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC5.86□□□□□ -1.47
CUX1P39880 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CUX1P39880 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CUX1P39880 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CUX1P39880 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC5.86□□□□□ -1.47
CUX1P39880 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
CUX1P39880 AC004944.1-201ENST00000517807 3059 ntBASIC5.86□□□□□ -1.47
CUX1P39880 AC093719.1-202ENST00000392735 373 ntBASIC5.86□□□□□ -1.47
CUX1P39880 MOB1AP1-201ENST00000430903 535 ntBASIC5.86□□□□□ -1.47
CUX1P39880 AL831737.1-201ENST00000441288 271 ntBASIC5.86□□□□□ -1.47
CUX1P39880 MTND6P5-201ENST00000448266 512 ntBASIC5.86□□□□□ -1.47
CUX1P39880 AC096576.1-201ENST00000489014 359 ntBASIC5.86□□□□□ -1.47
CUX1P39880 PRELID3BP6-201ENST00000503839 571 ntBASIC5.86□□□□□ -1.47
CUX1P39880 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.86□□□□□ -1.47
CUX1P39880 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC5.86□□□□□ -1.47
CUX1P39880 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC5.86□□□□□ -1.47
CUX1P39880 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC5.86□□□□□ -1.47
CUX1P39880 ACTR3BP1-201ENST00000605584 1247 ntBASIC5.86□□□□□ -1.47
CUX1P39880 AC084036.1-201ENST00000609190 508 ntBASIC5.86□□□□□ -1.47
CUX1P39880 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.86□□□□□ -1.47
CUX1P39880 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC5.86□□□□□ -1.47
CUX1P39880 OR6C71P-202ENST00000641886 1107 ntBASIC5.86□□□□□ -1.47
CUX1P39880 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CUX1P39880 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CUX1P39880 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
CUX1P39880 RNA5SP42-201ENST00000364278 115 ntBASIC5.85□□□□□ -1.47
CUX1P39880 IGKV1OR-3-201ENST00000446944 348 ntBASIC5.85□□□□□ -1.47
CUX1P39880 S100A11P2-201ENST00000467589 312 ntBASIC5.85□□□□□ -1.47
CUX1P39880 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CUX1P39880 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC5.85□□□□□ -1.47
CUX1P39880 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC5.85□□□□□ -1.47
CUX1P39880 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.85□□□□□ -1.47
CUX1P39880 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
CUX1P39880 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CUX1P39880 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
CUX1P39880 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.85□□□□□ -1.47
CUX1P39880 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC5.85□□□□□ -1.47
CUX1P39880 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.85□□□□□ -1.47
CUX1P39880 ERMN-204ENST00000409925 556 ntTSL 4 BASIC5.84□□□□□ -1.47
CUX1P39880 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC5.84□□□□□ -1.47
CUX1P39880 NPM1P48-201ENST00000436002 853 ntBASIC5.84□□□□□ -1.47
CUX1P39880 AC037198.2-201ENST00000478845 733 ntBASIC5.84□□□□□ -1.47
CUX1P39880 RN7SKP209-201ENST00000516888 304 ntBASIC5.84□□□□□ -1.47
CUX1P39880 AC009464.1-201ENST00000615731 469 ntBASIC5.84□□□□□ -1.47
CUX1P39880 AL031595.2-201ENST00000624215 19071 ntBASIC5.84□□□□□ -1.47
CUX1P39880 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
CUX1P39880 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
CUX1P39880 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC5.84□□□□□ -1.48
CUX1P39880 ATP6V0E1P4-201ENST00000427294 242 ntBASIC5.84□□□□□ -1.48
CUX1P39880 RPL12P18-201ENST00000437175 325 ntBASIC5.84□□□□□ -1.48
CUX1P39880 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC5.84□□□□□ -1.48
CUX1P39880 RN7SL594P-201ENST00000470590 287 ntBASIC5.84□□□□□ -1.48
CUX1P39880 TMED11P-201ENST00000479478 690 ntBASIC5.84□□□□□ -1.48
CUX1P39880 RPL7P38-201ENST00000488396 739 ntBASIC5.84□□□□□ -1.48
CUX1P39880 RNA5SP341-201ENST00000516261 117 ntBASIC5.84□□□□□ -1.48
CUX1P39880 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC5.84□□□□□ -1.48
CUX1P39880 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC5.84□□□□□ -1.48
CUX1P39880 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.48
CUX1P39880 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CUX1P39880 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.83□□□□□ -1.48
CUX1P39880 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CUX1P39880 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CUX1P39880 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.83□□□□□ -1.48
CUX1P39880 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CUX1P39880 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC5.83□□□□□ -1.48
CUX1P39880 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.83□□□□□ -1.48
CUX1P39880 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CUX1P39880 MIR513A2-201ENST00000385249 127 ntBASIC5.83□□□□□ -1.48
CUX1P39880 AL136131.1-201ENST00000406079 803 ntBASIC5.83□□□□□ -1.48
CUX1P39880 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC5.83□□□□□ -1.48
CUX1P39880 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC5.83□□□□□ -1.48
CUX1P39880 NPM1P39-201ENST00000449818 867 ntBASIC5.83□□□□□ -1.48
CUX1P39880 AC097262.1-201ENST00000452559 548 ntBASIC5.83□□□□□ -1.48
CUX1P39880 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC5.83□□□□□ -1.48
CUX1P39880 AC084357.1-201ENST00000473404 255 ntBASIC5.83□□□□□ -1.48
CUX1P39880 FTH1P9-201ENST00000513251 355 ntBASIC5.83□□□□□ -1.48
CUX1P39880 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC5.83□□□□□ -1.48
CUX1P39880 Vault.1-201ENST00000516474 102 ntBASIC5.83□□□□□ -1.48
CUX1P39880 AC024341.1-201ENST00000526444 1552 ntBASIC5.83□□□□□ -1.48
CUX1P39880 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC5.83□□□□□ -1.48
CUX1P39880 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.83□□□□□ -1.48
CUX1P39880 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.83□□□□□ -1.48
CUX1P39880 AP005205.1-201ENST00000563503 508 ntBASIC5.83□□□□□ -1.48
CUX1P39880 AC006363.1-201ENST00000603806 463 ntBASIC5.83□□□□□ -1.48
CUX1P39880 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CUX1P39880 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CUX1P39880 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.82□□□□□ -1.48
CUX1P39880 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CUX1P39880 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CUX1P39880 DDX6P1-205ENST00000441966 1436 ntBASIC5.82□□□□□ -1.48
CUX1P39880 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC5.82□□□□□ -1.48
CUX1P39880 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC5.82□□□□□ -1.48
CUX1P39880 NANOGNBP1-201ENST00000448444 480 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms