Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.4□□□□□ -1.7
COL5A3P25940 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
COL5A3P25940 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.4□□□□□ -1.7
COL5A3P25940 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
COL5A3P25940 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL5A3P25940 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
COL5A3P25940 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL5A3P25940 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.71
COL5A3P25940 RHOT1P2-201ENST00000366423 333 ntBASIC4.4□□□□□ -1.71
COL5A3P25940 NPM1P39-201ENST00000449818 867 ntBASIC4.4□□□□□ -1.71
COL5A3P25940 RN7SL504P-201ENST00000494496 287 ntBASIC4.4□□□□□ -1.71
COL5A3P25940 RNA5SP341-201ENST00000516261 117 ntBASIC4.4□□□□□ -1.71
COL5A3P25940 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.4□□□□□ -1.71
COL5A3P25940 AC008638.3-201ENST00000603341 463 ntBASIC4.4□□□□□ -1.71
COL5A3P25940 AC009464.1-201ENST00000615731 469 ntBASIC4.4□□□□□ -1.71
COL5A3P25940 AL669942.2-201ENST00000620352 697 ntBASIC4.4□□□□□ -1.71
COL5A3P25940 AC022149.2-201ENST00000621061 203 ntBASIC4.4□□□□□ -1.71
COL5A3P25940 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL5A3P25940 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL5A3P25940 AC120036.2-201ENST00000509729 1474 ntBASIC4.4□□□□□ -1.71
COL5A3P25940 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
COL5A3P25940 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.39□□□□□ -1.71
COL5A3P25940 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.39□□□□□ -1.71
COL5A3P25940 AC024341.1-201ENST00000526444 1552 ntBASIC4.39□□□□□ -1.71
COL5A3P25940 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
COL5A3P25940 Y_RNA.500-201ENST00000384466 111 ntBASIC4.39□□□□□ -1.71
COL5A3P25940 MIR513A2-201ENST00000385249 127 ntBASIC4.39□□□□□ -1.71
COL5A3P25940 GSTA8P-201ENST00000404253 637 ntBASIC4.39□□□□□ -1.71
COL5A3P25940 RPL21P109-201ENST00000422213 475 ntBASIC4.39□□□□□ -1.71
COL5A3P25940 YWHAQP9-201ENST00000445891 512 ntBASIC4.39□□□□□ -1.71
COL5A3P25940 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.39□□□□□ -1.71
COL5A3P25940 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.39□□□□□ -1.71
COL5A3P25940 AC084357.1-201ENST00000473404 255 ntBASIC4.39□□□□□ -1.71
COL5A3P25940 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.39□□□□□ -1.71
COL5A3P25940 TBCA-206ENST00000518338 551 ntTSL 2 BASIC4.39□□□□□ -1.71
COL5A3P25940 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.39□□□□□ -1.71
COL5A3P25940 AC006363.1-201ENST00000603806 463 ntBASIC4.39□□□□□ -1.71
COL5A3P25940 AC018690.1-201ENST00000608144 626 ntBASIC4.39□□□□□ -1.71
COL5A3P25940 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL5A3P25940 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
COL5A3P25940 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL5A3P25940 AC008079.2-201ENST00000623543 20396 ntBASIC4.39□□□□□ -1.71
COL5A3P25940 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.39□□□□□ -1.71
COL5A3P25940 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.39□□□□□ -1.71
COL5A3P25940 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL5A3P25940 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.39□□□□□ -1.71
COL5A3P25940 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL5A3P25940 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL5A3P25940 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.38□□□□□ -1.71
COL5A3P25940 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.38□□□□□ -1.71
COL5A3P25940 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL5A3P25940 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL5A3P25940 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.38□□□□□ -1.71
COL5A3P25940 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL5A3P25940 RNU6-1279P-201ENST00000383917 103 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.38□□□□□ -1.71
COL5A3P25940 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.38□□□□□ -1.71
COL5A3P25940 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.38□□□□□ -1.71
COL5A3P25940 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.38□□□□□ -1.71
COL5A3P25940 AC037198.2-201ENST00000478845 733 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL5A3P25940 STMN1P2-201ENST00000508435 439 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 RPL23AP94-201ENST00000512518 302 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.38□□□□□ -1.71
COL5A3P25940 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.38□□□□□ -1.71
COL5A3P25940 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.38□□□□□ -1.71
COL5A3P25940 FAM35BP-202ENST00000497389 3337 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL5A3P25940 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL5A3P25940 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL5A3P25940 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC4.38□□□□□ -1.71
COL5A3P25940 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL5A3P25940 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL5A3P25940 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
COL5A3P25940 MUC2-202ENST00000613187 4845 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.38□□□□□ -1.71
COL5A3P25940 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL5A3P25940 RNU1-18P-201ENST00000363062 164 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 AL136131.1-201ENST00000406079 803 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 RPS29P31-201ENST00000446147 164 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.38□□□□□ -1.71
COL5A3P25940 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.38□□□□□ -1.71
COL5A3P25940 HMGB3P13-201ENST00000511263 607 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.38□□□□□ -1.71
COL5A3P25940 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.38□□□□□ -1.71
COL5A3P25940 AC092747.2-201ENST00000545069 983 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 AL121594.4-201ENST00000556211 1196 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 AC138627.1-204ENST00000641894 765 ntBASIC4.38□□□□□ -1.71
COL5A3P25940 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL5A3P25940 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL5A3P25940 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.37□□□□□ -1.71
COL5A3P25940 AC093849.1-201ENST00000563631 2209 ntBASIC4.37□□□□□ -1.71
COL5A3P25940 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL5A3P25940 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL5A3P25940 RNA5SP229-201ENST00000410809 99 ntBASIC4.37□□□□□ -1.71
COL5A3P25940 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.37□□□□□ -1.71
COL5A3P25940 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.37□□□□□ -1.71
COL5A3P25940 OR1AA1P-201ENST00000419597 916 ntBASIC4.37□□□□□ -1.71
COL5A3P25940 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC4.37□□□□□ -1.71
COL5A3P25940 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 144.4 ms