Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC6.1□□□□□ -1.43
LIG3P49916 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
LIG3P49916 PROS2P-201ENST00000474651 1951 ntBASIC6.09□□□□□ -1.43
LIG3P49916 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
LIG3P49916 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
LIG3P49916 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
LIG3P49916 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC6.09□□□□□ -1.43
LIG3P49916 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC6.09□□□□□ -1.43
LIG3P49916 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
LIG3P49916 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
LIG3P49916 CBX3P1-201ENST00000325243 554 ntBASIC6.09□□□□□ -1.43
LIG3P49916 RN7SKP185-201ENST00000362813 326 ntBASIC6.09□□□□□ -1.43
LIG3P49916 Y_RNA.61-201ENST00000362835 102 ntBASIC6.09□□□□□ -1.43
LIG3P49916 RN7SKP145-201ENST00000363291 303 ntBASIC6.09□□□□□ -1.43
LIG3P49916 RNU6-1090P-201ENST00000364065 94 ntBASIC6.09□□□□□ -1.43
LIG3P49916 Y_RNA.295-201ENST00000364918 102 ntBASIC6.09□□□□□ -1.43
LIG3P49916 SNORD115.1-201ENST00000391109 76 ntBASIC6.09□□□□□ -1.43
LIG3P49916 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC6.09□□□□□ -1.43
LIG3P49916 GSTM3P2-201ENST00000412746 530 ntBASIC6.09□□□□□ -1.43
LIG3P49916 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.09□□□□□ -1.43
LIG3P49916 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
LIG3P49916 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
LIG3P49916 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
LIG3P49916 USP9YP36-201ENST00000424581 829 ntBASIC6.09□□□□□ -1.43
LIG3P49916 FCF1P1-201ENST00000432690 571 ntBASIC6.09□□□□□ -1.43
LIG3P49916 MTCYBP45-201ENST00000435243 565 ntBASIC6.09□□□□□ -1.43
LIG3P49916 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC6.09□□□□□ -1.43
LIG3P49916 RPL22P17-201ENST00000438729 315 ntBASIC6.09□□□□□ -1.43
LIG3P49916 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC6.09□□□□□ -1.43
LIG3P49916 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC6.09□□□□□ -1.43
LIG3P49916 SEPT7P3-201ENST00000455017 621 ntBASIC6.09□□□□□ -1.43
LIG3P49916 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
LIG3P49916 AP000852.1-201ENST00000472460 573 ntBASIC6.09□□□□□ -1.43
LIG3P49916 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC6.09□□□□□ -1.43
LIG3P49916 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC6.09□□□□□ -1.43
LIG3P49916 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.09□□□□□ -1.43
LIG3P49916 AP003396.4-201ENST00000527574 265 ntBASIC6.09□□□□□ -1.43
LIG3P49916 FAM92A1P1-201ENST00000528023 890 ntBASIC6.09□□□□□ -1.43
LIG3P49916 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC6.09□□□□□ -1.43
LIG3P49916 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC6.09□□□□□ -1.43
LIG3P49916 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC6.09□□□□□ -1.43
LIG3P49916 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC6.09□□□□□ -1.43
LIG3P49916 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC6.09□□□□□ -1.43
LIG3P49916 AC007956.1-201ENST00000555623 542 ntBASIC6.09□□□□□ -1.43
LIG3P49916 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.09□□□□□ -1.43
LIG3P49916 RPA2P1-201ENST00000556557 721 ntBASIC6.09□□□□□ -1.43
LIG3P49916 HSPE1P3-201ENST00000559254 309 ntBASIC6.09□□□□□ -1.43
LIG3P49916 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
LIG3P49916 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC6.09□□□□□ -1.43
LIG3P49916 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC6.09□□□□□ -1.43
LIG3P49916 AP005119.1-201ENST00000580956 292 ntBASIC6.09□□□□□ -1.43
LIG3P49916 AC005224.3-201ENST00000584683 2140 ntBASIC6.09□□□□□ -1.43
LIG3P49916 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.09□□□□□ -1.43
LIG3P49916 AC020916.2-201ENST00000591242 360 ntBASIC6.09□□□□□ -1.43
LIG3P49916 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.09□□□□□ -1.43
LIG3P49916 AC112230.1-201ENST00000604342 547 ntBASIC6.09□□□□□ -1.43
LIG3P49916 AC007363.1-201ENST00000604736 620 ntBASIC6.09□□□□□ -1.43
LIG3P49916 AC245014.3-201ENST00000618589 347 ntBASIC6.09□□□□□ -1.43
LIG3P49916 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC6.09□□□□□ -1.43
LIG3P49916 AC022400.9-201ENST00000623633 273 ntBASIC6.09□□□□□ -1.43
LIG3P49916 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
LIG3P49916 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC6.09□□□□□ -1.43
LIG3P49916 PWAR1-201ENST00000624188 2414 ntBASIC6.09□□□□□ -1.43
LIG3P49916 AL442128.2-201ENST00000620246 1824 ntBASIC6.09□□□□□ -1.44
LIG3P49916 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.08□□□□□ -1.44
LIG3P49916 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC6.08□□□□□ -1.44
LIG3P49916 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
LIG3P49916 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
LIG3P49916 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.08□□□□□ -1.44
LIG3P49916 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
LIG3P49916 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
LIG3P49916 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC6.08□□□□□ -1.44
LIG3P49916 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
LIG3P49916 Y_RNA.38-201ENST00000362617 102 ntBASIC6.08□□□□□ -1.44
LIG3P49916 RNU6-181P-201ENST00000363225 107 ntBASIC6.08□□□□□ -1.44
LIG3P49916 RNU105B-201ENST00000364478 208 ntBASIC6.08□□□□□ -1.44
LIG3P49916 SNORA11.3-201ENST00000408471 128 ntBASIC6.08□□□□□ -1.44
LIG3P49916 OR51A5P-201ENST00000415429 942 ntBASIC6.08□□□□□ -1.44
LIG3P49916 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC6.08□□□□□ -1.44
LIG3P49916 USP9YP27-201ENST00000418455 438 ntBASIC6.08□□□□□ -1.44
LIG3P49916 RPS15AP30-201ENST00000420976 390 ntBASIC6.08□□□□□ -1.44
LIG3P49916 PIGFP2-201ENST00000421400 651 ntBASIC6.08□□□□□ -1.44
LIG3P49916 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.08□□□□□ -1.44
LIG3P49916 TUBB4BP6-201ENST00000437576 479 ntBASIC6.08□□□□□ -1.44
LIG3P49916 USP9YP8-201ENST00000441913 500 ntBASIC6.08□□□□□ -1.44
LIG3P49916 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC6.08□□□□□ -1.44
LIG3P49916 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC6.08□□□□□ -1.44
LIG3P49916 TPT1P14-201ENST00000448018 505 ntBASIC6.08□□□□□ -1.44
LIG3P49916 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC6.08□□□□□ -1.44
LIG3P49916 AC022431.1-201ENST00000450941 438 ntBASIC6.08□□□□□ -1.44
LIG3P49916 CFL1P4-201ENST00000451536 498 ntBASIC6.08□□□□□ -1.44
LIG3P49916 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC6.08□□□□□ -1.44
LIG3P49916 RN7SL197P-201ENST00000466981 299 ntBASIC6.08□□□□□ -1.44
LIG3P49916 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC6.08□□□□□ -1.44
LIG3P49916 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC6.08□□□□□ -1.44
LIG3P49916 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms