Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 SNORD116-26-201ENST00000516006 96 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 UBTFL9-201ENST00000534504 1148 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.18□□□□□ -1.74
TNFRSF4P43489 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 AC104229.1-201ENST00000561364 255 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 HSPE1P5-201ENST00000561489 272 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 AC090751.1-201ENST00000566966 267 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 MIR5685-201ENST00000579080 79 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 MIR4444-1-201ENST00000581696 74 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 MIR4512-201ENST00000583257 77 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 MIR4444-2-201ENST00000584390 74 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 CCDC58P3-201ENST00000590792 430 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 AC092574.1-201ENST00000609771 420 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 AC131238.1-201ENST00000617135 328 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 ATE1-AS1-202ENST00000636460 506 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 AC022031.1-201ENST00000585985 2593 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TNFRSF4P43489 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
TNFRSF4P43489 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
TNFRSF4P43489 AC016588.2-201ENST00000632484 3021 ntBASIC4.18□□□□□ -1.74
TNFRSF4P43489 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
TNFRSF4P43489 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
TNFRSF4P43489 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.18□□□□□ -1.74
TNFRSF4P43489 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TNFRSF4P43489 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TNFRSF4P43489 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TNFRSF4P43489 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 ATP5F1P6-201ENST00000402768 767 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 RNU4-6P-201ENST00000410804 122 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 AL606495.1-201ENST00000422100 813 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 AL691449.1-201ENST00000426570 421 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 AC093422.3-201ENST00000428506 305 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 ETF1P3-201ENST00000430422 1160 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
TNFRSF4P43489 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 RPL6P5-201ENST00000445678 828 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 HMGB3P21-201ENST00000452483 547 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 AC023050.1-201ENST00000498198 304 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 RNU6-467P-201ENST00000517027 110 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 AC063950.1-201ENST00000552036 308 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 AC120057.2-201ENST00000571520 271 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 AP003117.1-201ENST00000602771 554 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 OR2BH1P-201ENST00000608850 864 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 RMST_10.1-201ENST00000616309 154 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 AC103798.2-201ENST00000624292 632 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 AC080188.3-201ENST00000624842 748 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 U6.107-201ENST00000637108 79 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TNFRSF4P43489 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TNFRSF4P43489 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TNFRSF4P43489 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 AC008432.1-201ENST00000615912 1320 ntBASIC4.17□□□□□ -1.74
TNFRSF4P43489 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TNFRSF4P43489 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
TNFRSF4P43489 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.17□□□□□ -1.74
TNFRSF4P43489 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.16□□□□□ -1.74
TNFRSF4P43489 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
TNFRSF4P43489 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.16□□□□□ -1.74
TNFRSF4P43489 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
TNFRSF4P43489 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.16□□□□□ -1.74
TNFRSF4P43489 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
TNFRSF4P43489 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TNFRSF4P43489 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
TNFRSF4P43489 OR6K3-202ENST00000368146 996 ntBASIC4.16□□□□□ -1.74
TNFRSF4P43489 OR52E6-202ENST00000379946 954 ntBASIC4.16□□□□□ -1.74
TNFRSF4P43489 SNORD96B-201ENST00000386148 79 ntBASIC4.16□□□□□ -1.74
TNFRSF4P43489 MTATP6P31-201ENST00000406985 692 ntBASIC4.16□□□□□ -1.74
TNFRSF4P43489 RN7SKP167-201ENST00000411047 285 ntBASIC4.16□□□□□ -1.74
TNFRSF4P43489 HMGB3P31-201ENST00000413333 595 ntBASIC4.16□□□□□ -1.74
TNFRSF4P43489 AL158050.1-201ENST00000416077 457 ntBASIC4.16□□□□□ -1.74
TNFRSF4P43489 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC4.16□□□□□ -1.74
TNFRSF4P43489 AL138785.1-201ENST00000425821 331 ntBASIC4.16□□□□□ -1.74
TNFRSF4P43489 OR5BE1P-201ENST00000425977 939 ntBASIC4.16□□□□□ -1.74
TNFRSF4P43489 AL031736.2-201ENST00000426573 787 ntBASIC4.16□□□□□ -1.74
TNFRSF4P43489 AL512661.1-201ENST00000434586 1253 ntBASIC4.16□□□□□ -1.74
TNFRSF4P43489 RPS4XP4-201ENST00000443195 763 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 165.1 ms