Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 OR4K12P-201ENST00000406538 961 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 AL450338.1-201ENST00000407987 512 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXD3P31249 RN7SKP126-201ENST00000411143 300 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD3P31249 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD3P31249 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXD3P31249 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD3P31249 AC009237.2-201ENST00000421358 284 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 VN1R54P-201ENST00000435210 1049 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 NDUFB4P8-201ENST00000435351 367 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXD3P31249 AC006466.1-201ENST00000438721 289 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXD3P31249 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXD3P31249 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD3P31249 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXD3P31249 NDUFA5P7-201ENST00000452914 242 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
HOXD3P31249 RN7SL197P-201ENST00000466981 299 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 RPS4XP15-201ENST00000489210 795 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 MTCYBP17-201ENST00000503579 789 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 AC113430.1-201ENST00000506872 718 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 MTATP6P22-201ENST00000507369 598 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
HOXD3P31249 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD3P31249 MTCYBP43-201ENST00000513621 740 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 SCARNA20.4-201ENST00000516969 131 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 MTND1P5-201ENST00000517906 940 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD3P31249 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD3P31249 AP000676.2-201ENST00000529711 301 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXD3P31249 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD3P31249 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD3P31249 AC127381.1-201ENST00000555979 939 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXD3P31249 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD3P31249 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXD3P31249 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXD3P31249 MTND1P15-201ENST00000579262 949 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXD3P31249 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXD3P31249 AC008687.2-201ENST00000597865 520 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 VN1R92P-201ENST00000598511 928 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 AC083899.3-201ENST00000603413 594 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXD3P31249 DLEU2_1.1-201ENST00000612089 120 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD3P31249 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXD3P31249 DLEU2_1.2-201ENST00000614667 120 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 AC243756.2-201ENST00000618406 463 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 AC012414.7-202ENST00000622705 1090 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 LINC01739-205ENST00000641890 573 ntBASIC4.11□□□□□ -1.75
HOXD3P31249 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD3P31249 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXD3P31249 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
HOXD3P31249 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD3P31249 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD3P31249 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD3P31249 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
HOXD3P31249 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
HOXD3P31249 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXD3P31249 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
HOXD3P31249 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXD3P31249 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 OR55B1P-203ENST00000641518 2602 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXD3P31249 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 AC100757.1-201ENST00000616872 1835 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 RPL21P132-201ENST00000331267 462 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 Y_RNA.41-201ENST00000362646 102 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 RNU4-44P-201ENST00000363050 141 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 SNORA70.6-201ENST00000383934 134 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HOXD3P31249 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
HOXD3P31249 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 AL663109.1-201ENST00000411498 844 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 RPL6P29-201ENST00000414863 865 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 CDK8P2-201ENST00000415020 547 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 RBMY2KP-201ENST00000418221 992 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC092634.6-201ENST00000418558 192 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD3P31249 MTCO3P1-205ENST00000422088 832 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD3P31249 AC004448.2-201ENST00000422360 586 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC099336.2-201ENST00000422457 254 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 223.1 ms