Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 AC010203.1-204ENST00000548782 407 ntBASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 NT5C-211ENST00000582170 653 ntTSL 3 BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 AC096733.2-201ENST00000609937 1394 ntBASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CTDP1Q9Y5B0 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 LINC01465-201ENST00000408887 1940 ntBASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 GPX4-207ENST00000589115 812 ntTSL 2 BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CTDP1Q9Y5B0 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CTDP1Q9Y5B0 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
CTDP1Q9Y5B0 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
CTDP1Q9Y5B0 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
CTDP1Q9Y5B0 AC073508.3-201ENST00000619697 1419 ntBASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 HMGA1P5-201ENST00000412453 271 ntBASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 SLC25A1P2-201ENST00000430693 912 ntBASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 LGALS8-AS1-201ENST00000487567 1457 ntBASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC22.32■■□□□ 1.16
CTDP1Q9Y5B0 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 INGX-201ENST00000359239 846 ntBASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CTDP1Q9Y5B0 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CTDP1Q9Y5B0 AL162377.1-201ENST00000618844 1793 ntBASIC22.3■■□□□ 1.16
CTDP1Q9Y5B0 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
CTDP1Q9Y5B0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CTDP1Q9Y5B0 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
CTDP1Q9Y5B0 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC22.3■■□□□ 1.16
CTDP1Q9Y5B0 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CTDP1Q9Y5B0 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC22.3■■□□□ 1.16
CTDP1Q9Y5B0 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CTDP1Q9Y5B0 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC22.3■■□□□ 1.16
CTDP1Q9Y5B0 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC22.3■■□□□ 1.16
CTDP1Q9Y5B0 NME3-204ENST00000563498 920 ntTSL 2 BASIC22.3■■□□□ 1.16
CTDP1Q9Y5B0 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms