Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 AC005521.1-201ENST00000393351 872 ntBASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 AC097488.1-201ENST00000507834 756 ntBASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 C2orf69P3-201ENST00000565542 1120 ntBASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 AC096733.2-201ENST00000609937 1394 ntBASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 AC004951.3-201ENST00000418645 1148 ntBASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 SLC25A3P1-201ENST00000443844 931 ntBASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 AC008040.2-201ENST00000461049 708 ntBASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 Z85996.1-201ENST00000494644 937 ntBASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRAIPQ9BWF2 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 TERF1P1-201ENST00000311003 1181 ntBASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 AC011298.2-201ENST00000617989 482 ntBASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 AC007952.6-201ENST00000573168 2673 ntBASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 AC003957.1-201ENST00000625108 2673 ntBASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.18■□□□□ 0.98
TRAIPQ9BWF2 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAIPQ9BWF2 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
TRAIPQ9BWF2 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAIPQ9BWF2 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.17■□□□□ 0.98
TRAIPQ9BWF2 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.17■□□□□ 0.98
TRAIPQ9BWF2 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.17■□□□□ 0.98
TRAIPQ9BWF2 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.17■□□□□ 0.98
TRAIPQ9BWF2 AC009237.14-201ENST00000609975 1594 ntBASIC21.17■□□□□ 0.98
TRAIPQ9BWF2 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAIPQ9BWF2 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAIPQ9BWF2 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TRAIPQ9BWF2 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 CRYGFP-201ENST00000418459 633 ntBASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
TRAIPQ9BWF2 RNF165-205ENST00000588679 2904 ntBASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms