Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
IFT140Q96RY7 MIR574-201ENST00000385209 96 ntBASIC32.17■■■□□ 2.74
IFT140Q96RY7 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
IFT140Q96RY7 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC32.17■■■□□ 2.74
IFT140Q96RY7 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC32.17■■■□□ 2.74
IFT140Q96RY7 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC32.17■■■□□ 2.74
IFT140Q96RY7 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
IFT140Q96RY7 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC32.17■■■□□ 2.74
IFT140Q96RY7 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC32.17■■■□□ 2.74
IFT140Q96RY7 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
IFT140Q96RY7 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
IFT140Q96RY7 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
IFT140Q96RY7 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC32.16■■■□□ 2.74
IFT140Q96RY7 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC32.16■■■□□ 2.74
IFT140Q96RY7 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC32.16■■■□□ 2.74
IFT140Q96RY7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
IFT140Q96RY7 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC32.16■■■□□ 2.74
IFT140Q96RY7 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
IFT140Q96RY7 FP700111.2-201ENST00000619190 1892 ntBASIC32.16■■■□□ 2.74
IFT140Q96RY7 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
IFT140Q96RY7 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
IFT140Q96RY7 MIR662-201ENST00000384847 95 ntBASIC32.16■■■□□ 2.74
IFT140Q96RY7 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
IFT140Q96RY7 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
IFT140Q96RY7 AC092183.1-201ENST00000469884 875 ntBASIC32.16■■■□□ 2.74
IFT140Q96RY7 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC32.16■■■□□ 2.74
IFT140Q96RY7 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
IFT140Q96RY7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC32.16■■■□□ 2.74
IFT140Q96RY7 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC32.15■■■□□ 2.74
IFT140Q96RY7 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
IFT140Q96RY7 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC32.15■■■□□ 2.74
IFT140Q96RY7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
IFT140Q96RY7 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC32.15■■■□□ 2.74
IFT140Q96RY7 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
IFT140Q96RY7 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC32.15■■■□□ 2.74
IFT140Q96RY7 PPIE-208ENST00000470213 927 ntTSL 3 BASIC32.15■■■□□ 2.74
IFT140Q96RY7 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC32.15■■■□□ 2.74
IFT140Q96RY7 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC32.15■■■□□ 2.74
IFT140Q96RY7 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
IFT140Q96RY7 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC32.14■■■□□ 2.74
IFT140Q96RY7 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
IFT140Q96RY7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC32.14■■■□□ 2.74
IFT140Q96RY7 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
IFT140Q96RY7 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
IFT140Q96RY7 AL590627.1-203ENST00000421194 1026 ntBASIC32.14■■■□□ 2.74
IFT140Q96RY7 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC32.14■■■□□ 2.74
IFT140Q96RY7 SEC1P-202ENST00000473944 940 ntBASIC32.14■■■□□ 2.74
IFT140Q96RY7 AL353801.3-201ENST00000609898 542 ntBASIC32.14■■■□□ 2.74
IFT140Q96RY7 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC32.14■■■□□ 2.74
IFT140Q96RY7 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC32.14■■■□□ 2.74
IFT140Q96RY7 AP001271.2-201ENST00000624018 1556 ntBASIC32.13■■■□□ 2.73
IFT140Q96RY7 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC32.13■■■□□ 2.73
IFT140Q96RY7 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
IFT140Q96RY7 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC32.13■■■□□ 2.73
IFT140Q96RY7 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC32.13■■■□□ 2.73
IFT140Q96RY7 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
IFT140Q96RY7 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC32.13■■■□□ 2.73
IFT140Q96RY7 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
IFT140Q96RY7 LINC01711-201ENST00000598340 967 ntBASIC32.13■■■□□ 2.73
IFT140Q96RY7 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC32.13■■■□□ 2.73
IFT140Q96RY7 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC32.13■■■□□ 2.73
IFT140Q96RY7 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC32.12■■■□□ 2.73
IFT140Q96RY7 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
IFT140Q96RY7 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC32.12■■■□□ 2.73
IFT140Q96RY7 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC32.12■■■□□ 2.73
IFT140Q96RY7 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC32.12■■■□□ 2.73
IFT140Q96RY7 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC32.12■■■□□ 2.73
IFT140Q96RY7 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC32.12■■■□□ 2.73
IFT140Q96RY7 RNF126P1-202ENST00000569893 925 ntBASIC32.12■■■□□ 2.73
IFT140Q96RY7 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC32.12■■■□□ 2.73
IFT140Q96RY7 AC024243.1-201ENST00000609234 778 ntBASIC32.12■■■□□ 2.73
IFT140Q96RY7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
IFT140Q96RY7 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC32.12■■■□□ 2.73
IFT140Q96RY7 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
IFT140Q96RY7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC32.12■■■□□ 2.73
IFT140Q96RY7 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC32.11■■■□□ 2.73
IFT140Q96RY7 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC32.11■■■□□ 2.73
IFT140Q96RY7 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
IFT140Q96RY7 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
IFT140Q96RY7 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC32.11■■■□□ 2.73
IFT140Q96RY7 AL136038.4-201ENST00000603606 1261 ntBASIC32.11■■■□□ 2.73
IFT140Q96RY7 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC32.11■■■□□ 2.73
IFT140Q96RY7 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
IFT140Q96RY7 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
IFT140Q96RY7 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
IFT140Q96RY7 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
IFT140Q96RY7 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
IFT140Q96RY7 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
IFT140Q96RY7 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC32.1■■■□□ 2.73
IFT140Q96RY7 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
IFT140Q96RY7 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
IFT140Q96RY7 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC32.1■■■□□ 2.73
IFT140Q96RY7 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
IFT140Q96RY7 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
IFT140Q96RY7 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC32.1■■■□□ 2.73
IFT140Q96RY7 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
IFT140Q96RY7 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
IFT140Q96RY7 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
IFT140Q96RY7 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
IFT140Q96RY7 AC092720.2-201ENST00000602388 1665 ntBASIC32.1■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms