Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CLRN1P58418 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
CLRN1P58418 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.29■□□□□ 0.36
CLRN1P58418 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 Z82202.1-201ENST00000623446 1880 ntBASIC17.29■□□□□ 0.36
CLRN1P58418 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.28■□□□□ 0.36
CLRN1P58418 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.28■□□□□ 0.36
CLRN1P58418 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CLRN1P58418 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.28■□□□□ 0.36
CLRN1P58418 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CLRN1P58418 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CLRN1P58418 ESRRAP1-201ENST00000400596 1257 ntBASIC17.28■□□□□ 0.36
CLRN1P58418 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
CLRN1P58418 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.28■□□□□ 0.36
CLRN1P58418 KRT18P16-201ENST00000510337 1294 ntBASIC17.28■□□□□ 0.36
CLRN1P58418 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.28■□□□□ 0.36
CLRN1P58418 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.28■□□□□ 0.36
CLRN1P58418 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.28■□□□□ 0.36
CLRN1P58418 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.28■□□□□ 0.36
CLRN1P58418 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.28■□□□□ 0.36
CLRN1P58418 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CLRN1P58418 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CLRN1P58418 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLRN1P58418 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CLRN1P58418 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.28■□□□□ 0.36
CLRN1P58418 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.28■□□□□ 0.36
CLRN1P58418 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLRN1P58418 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.27■□□□□ 0.36
CLRN1P58418 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLRN1P58418 NBPF21P-201ENST00000425093 1451 ntBASIC17.27■□□□□ 0.36
CLRN1P58418 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
CLRN1P58418 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CLRN1P58418 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLRN1P58418 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLRN1P58418 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.27■□□□□ 0.36
CLRN1P58418 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.27■□□□□ 0.36
CLRN1P58418 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.27■□□□□ 0.36
CLRN1P58418 CD99P1-205ENST00000527459 561 ntBASIC17.27■□□□□ 0.36
CLRN1P58418 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.27■□□□□ 0.36
CLRN1P58418 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.27■□□□□ 0.36
CLRN1P58418 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.27■□□□□ 0.36
CLRN1P58418 AL032819.2-201ENST00000624543 2162 ntBASIC17.27■□□□□ 0.36
CLRN1P58418 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLRN1P58418 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CLRN1P58418 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
CLRN1P58418 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLRN1P58418 ZNF815P-204ENST00000434898 1737 ntBASIC17.27■□□□□ 0.35
CLRN1P58418 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CLRN1P58418 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLRN1P58418 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLRN1P58418 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLRN1P58418 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CLRN1P58418 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CLRN1P58418 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN1P58418 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN1P58418 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
CLRN1P58418 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CLRN1P58418 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN1P58418 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CLRN1P58418 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.26■□□□□ 0.35
CLRN1P58418 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN1P58418 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN1P58418 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN1P58418 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.26■□□□□ 0.35
CLRN1P58418 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.26■□□□□ 0.35
CLRN1P58418 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.26■□□□□ 0.35
CLRN1P58418 AC004264.1-201ENST00000608354 794 ntBASIC17.26■□□□□ 0.35
CLRN1P58418 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.26■□□□□ 0.35
CLRN1P58418 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
CLRN1P58418 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN1P58418 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN1P58418 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.26■□□□□ 0.35
CLRN1P58418 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN1P58418 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLRN1P58418 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CLRN1P58418 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN1P58418 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN1P58418 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN1P58418 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN1P58418 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLRN1P58418 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms