Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC22.37■■□□□ 1.17
HMGCS2P54868 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC22.37■■□□□ 1.17
HMGCS2P54868 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC22.37■■□□□ 1.17
HMGCS2P54868 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
HMGCS2P54868 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
HMGCS2P54868 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
HMGCS2P54868 AP005212.1-201ENST00000581547 1997 ntBASIC22.36■■□□□ 1.17
HMGCS2P54868 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
HMGCS2P54868 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
HMGCS2P54868 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC22.36■■□□□ 1.17
HMGCS2P54868 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC22.36■■□□□ 1.17
HMGCS2P54868 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC22.36■■□□□ 1.17
HMGCS2P54868 NT5C-210ENST00000582160 860 ntTSL 2 BASIC22.36■■□□□ 1.17
HMGCS2P54868 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC22.36■■□□□ 1.17
HMGCS2P54868 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC22.36■■□□□ 1.17
HMGCS2P54868 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
HMGCS2P54868 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC22.36■■□□□ 1.17
HMGCS2P54868 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
HMGCS2P54868 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC22.36■■□□□ 1.17
HMGCS2P54868 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC22.36■■□□□ 1.17
HMGCS2P54868 ANKRD18DP-204ENST00000455355 1975 ntBASIC22.36■■□□□ 1.17
HMGCS2P54868 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HMGCS2P54868 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HMGCS2P54868 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
HMGCS2P54868 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HMGCS2P54868 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HMGCS2P54868 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
HMGCS2P54868 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
HMGCS2P54868 SNX5-210ENST00000481323 562 ntTSL 3 BASIC22.35■■□□□ 1.17
HMGCS2P54868 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC22.35■■□□□ 1.17
HMGCS2P54868 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC22.35■■□□□ 1.17
HMGCS2P54868 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC22.35■■□□□ 1.17
HMGCS2P54868 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC22.35■■□□□ 1.17
HMGCS2P54868 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
HMGCS2P54868 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
HMGCS2P54868 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC22.35■■□□□ 1.17
HMGCS2P54868 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HMGCS2P54868 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
HMGCS2P54868 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC22.35■■□□□ 1.17
HMGCS2P54868 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC22.35■■□□□ 1.17
HMGCS2P54868 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC22.35■■□□□ 1.17
HMGCS2P54868 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGCS2P54868 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
HMGCS2P54868 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC22.34■■□□□ 1.17
HMGCS2P54868 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC22.34■■□□□ 1.17
HMGCS2P54868 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC22.34■■□□□ 1.17
HMGCS2P54868 PHB2-202ENST00000440277 996 ntTSL 5 BASIC22.34■■□□□ 1.17
HMGCS2P54868 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGCS2P54868 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
HMGCS2P54868 AL121894.2-201ENST00000602977 491 ntBASIC22.34■■□□□ 1.17
HMGCS2P54868 AC116407.4-201ENST00000623319 1061 ntBASIC22.34■■□□□ 1.17
HMGCS2P54868 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC22.34■■□□□ 1.17
HMGCS2P54868 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
HMGCS2P54868 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
HMGCS2P54868 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC22.34■■□□□ 1.17
HMGCS2P54868 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
HMGCS2P54868 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.33■■□□□ 1.17
HMGCS2P54868 AL137060.1-201ENST00000618151 2648 ntBASIC22.33■■□□□ 1.17
HMGCS2P54868 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGCS2P54868 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC22.33■■□□□ 1.17
HMGCS2P54868 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.33■■□□□ 1.17
HMGCS2P54868 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGCS2P54868 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HMGCS2P54868 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC22.33■■□□□ 1.17
HMGCS2P54868 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
HMGCS2P54868 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC22.33■■□□□ 1.17
HMGCS2P54868 KRT126P-201ENST00000549467 1181 ntBASIC22.33■■□□□ 1.17
HMGCS2P54868 DFFB-212ENST00000625756 649 ntTSL 5 BASIC22.33■■□□□ 1.17
HMGCS2P54868 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
HMGCS2P54868 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
HMGCS2P54868 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
HMGCS2P54868 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC22.33■■□□□ 1.16
HMGCS2P54868 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
HMGCS2P54868 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
HMGCS2P54868 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
HMGCS2P54868 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC22.33■■□□□ 1.16
HMGCS2P54868 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
HMGCS2P54868 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC22.33■■□□□ 1.16
HMGCS2P54868 AL162377.1-201ENST00000618844 1793 ntBASIC22.33■■□□□ 1.16
HMGCS2P54868 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
HMGCS2P54868 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC22.32■■□□□ 1.16
HMGCS2P54868 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
HMGCS2P54868 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
HMGCS2P54868 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC22.32■■□□□ 1.16
HMGCS2P54868 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC22.32■■□□□ 1.16
HMGCS2P54868 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
HMGCS2P54868 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC22.32■■□□□ 1.16
HMGCS2P54868 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
HMGCS2P54868 DAP-202ENST00000432074 1048 ntTSL 2 BASIC22.32■■□□□ 1.16
HMGCS2P54868 KRT18P48-201ENST00000434763 852 ntBASIC22.32■■□□□ 1.16
HMGCS2P54868 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC22.32■■□□□ 1.16
HMGCS2P54868 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
HMGCS2P54868 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms