Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SPDYE13P-201ENST00000445314 798 ntBASIC19.3■□□□□ 0.68
CXCL12P48061 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.3■□□□□ 0.68
CXCL12P48061 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.3■□□□□ 0.68
CXCL12P48061 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
CXCL12P48061 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.3■□□□□ 0.68
CXCL12P48061 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CXCL12P48061 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.3■□□□□ 0.68
CXCL12P48061 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.3■□□□□ 0.68
CXCL12P48061 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.3■□□□□ 0.68
CXCL12P48061 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.3■□□□□ 0.68
CXCL12P48061 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.3■□□□□ 0.68
CXCL12P48061 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL12P48061 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CXCL12P48061 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CXCL12P48061 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.29■□□□□ 0.68
CXCL12P48061 AC004870.1-201ENST00000315132 882 ntBASIC19.29■□□□□ 0.68
CXCL12P48061 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.29■□□□□ 0.68
CXCL12P48061 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CXCL12P48061 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.29■□□□□ 0.68
CXCL12P48061 FDX1P1-201ENST00000449115 551 ntBASIC19.29■□□□□ 0.68
CXCL12P48061 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.29■□□□□ 0.68
CXCL12P48061 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.29■□□□□ 0.68
CXCL12P48061 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.29■□□□□ 0.68
CXCL12P48061 AC111152.3-201ENST00000569699 673 ntBASIC19.29■□□□□ 0.68
CXCL12P48061 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CXCL12P48061 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
CXCL12P48061 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
CXCL12P48061 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.28■□□□□ 0.68
CXCL12P48061 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL12P48061 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL12P48061 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL12P48061 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.28■□□□□ 0.68
CXCL12P48061 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL12P48061 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.28■□□□□ 0.68
CXCL12P48061 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL12P48061 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL12P48061 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL12P48061 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.28■□□□□ 0.68
CXCL12P48061 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL12P48061 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL12P48061 AL845331.1-201ENST00000424978 1190 ntBASIC19.28■□□□□ 0.68
CXCL12P48061 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.28■□□□□ 0.68
CXCL12P48061 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.28■□□□□ 0.68
CXCL12P48061 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.28■□□□□ 0.68
CXCL12P48061 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
CXCL12P48061 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CXCL12P48061 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL12P48061 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.28■□□□□ 0.68
CXCL12P48061 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL12P48061 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.28■□□□□ 0.68
CXCL12P48061 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL12P48061 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.28■□□□□ 0.68
CXCL12P48061 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.28■□□□□ 0.68
CXCL12P48061 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.28■□□□□ 0.68
CXCL12P48061 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.27■□□□□ 0.68
CXCL12P48061 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CXCL12P48061 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.27■□□□□ 0.68
CXCL12P48061 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CXCL12P48061 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CXCL12P48061 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CXCL12P48061 FEM1AP1-201ENST00000431297 1995 ntBASIC19.27■□□□□ 0.68
CXCL12P48061 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.27■□□□□ 0.68
CXCL12P48061 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CXCL12P48061 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.27■□□□□ 0.68
CXCL12P48061 AC034232.1-201ENST00000506026 1064 ntBASIC19.27■□□□□ 0.68
CXCL12P48061 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CXCL12P48061 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CXCL12P48061 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.27■□□□□ 0.68
CXCL12P48061 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.27■□□□□ 0.67
CXCL12P48061 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
CXCL12P48061 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CXCL12P48061 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CXCL12P48061 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CXCL12P48061 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CXCL12P48061 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
CXCL12P48061 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.26■□□□□ 0.67
CXCL12P48061 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.26■□□□□ 0.67
CXCL12P48061 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CXCL12P48061 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CXCL12P48061 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CXCL12P48061 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.26■□□□□ 0.67
CXCL12P48061 TSSC2-201ENST00000450217 709 ntBASIC19.26■□□□□ 0.67
CXCL12P48061 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.26■□□□□ 0.67
CXCL12P48061 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.26■□□□□ 0.67
CXCL12P48061 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CXCL12P48061 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
CXCL12P48061 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CXCL12P48061 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CXCL12P48061 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CXCL12P48061 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.25■□□□□ 0.67
CXCL12P48061 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CXCL12P48061 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.25■□□□□ 0.67
CXCL12P48061 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.25■□□□□ 0.67
CXCL12P48061 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms