Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC30.78■■■□□ 2.52
CLIP1P30622 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC30.77■■■□□ 2.52
CLIP1P30622 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC30.77■■■□□ 2.52
CLIP1P30622 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC30.77■■■□□ 2.52
CLIP1P30622 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC30.77■■■□□ 2.52
CLIP1P30622 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC30.77■■■□□ 2.52
CLIP1P30622 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC30.77■■■□□ 2.52
CLIP1P30622 CYGB-204ENST00000589342 815 ntTSL 3 BASIC30.77■■■□□ 2.52
CLIP1P30622 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CLIP1P30622 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CLIP1P30622 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC30.77■■■□□ 2.52
CLIP1P30622 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
CLIP1P30622 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC30.77■■■□□ 2.52
CLIP1P30622 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CLIP1P30622 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC30.76■■■□□ 2.52
CLIP1P30622 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CLIP1P30622 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CLIP1P30622 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC30.76■■■□□ 2.52
CLIP1P30622 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC30.76■■■□□ 2.51
CLIP1P30622 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC30.76■■■□□ 2.51
CLIP1P30622 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC30.76■■■□□ 2.51
CLIP1P30622 ECEL1P2-202ENST00000465689 757 ntBASIC30.76■■■□□ 2.51
CLIP1P30622 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
CLIP1P30622 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC30.76■■■□□ 2.51
CLIP1P30622 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CLIP1P30622 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CLIP1P30622 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC30.76■■■□□ 2.51
CLIP1P30622 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC30.76■■■□□ 2.51
CLIP1P30622 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC30.76■■■□□ 2.51
CLIP1P30622 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
CLIP1P30622 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CLIP1P30622 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC30.75■■■□□ 2.51
CLIP1P30622 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CLIP1P30622 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC30.75■■■□□ 2.51
CLIP1P30622 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CLIP1P30622 HIST1H2APS4-201ENST00000362070 348 ntBASIC30.75■■■□□ 2.51
CLIP1P30622 AL137013.1-201ENST00000432946 1228 ntBASIC30.75■■■□□ 2.51
CLIP1P30622 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CLIP1P30622 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC30.75■■■□□ 2.51
CLIP1P30622 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CLIP1P30622 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CLIP1P30622 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
CLIP1P30622 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC30.75■■■□□ 2.51
CLIP1P30622 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC30.75■■■□□ 2.51
CLIP1P30622 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CLIP1P30622 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC30.75■■■□□ 2.51
CLIP1P30622 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CLIP1P30622 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CLIP1P30622 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CLIP1P30622 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC30.74■■■□□ 2.51
CLIP1P30622 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
CLIP1P30622 AC010203.1-204ENST00000548782 407 ntBASIC30.74■■■□□ 2.51
CLIP1P30622 TPM1-226ENST00000560959 925 ntTSL 2 BASIC30.74■■■□□ 2.51
CLIP1P30622 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CLIP1P30622 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CLIP1P30622 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CLIP1P30622 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CLIP1P30622 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CLIP1P30622 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC30.73■■■□□ 2.51
CLIP1P30622 AL023803.3-201ENST00000615559 522 ntBASIC30.73■■■□□ 2.51
CLIP1P30622 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC30.73■■■□□ 2.51
CLIP1P30622 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC30.73■■■□□ 2.51
CLIP1P30622 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CLIP1P30622 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CLIP1P30622 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CLIP1P30622 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC30.73■■■□□ 2.51
CLIP1P30622 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CLIP1P30622 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC30.73■■■□□ 2.51
CLIP1P30622 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CLIP1P30622 PRSS44-201ENST00000515154 1146 ntBASIC30.73■■■□□ 2.51
CLIP1P30622 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC30.73■■■□□ 2.51
CLIP1P30622 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC30.72■■■□□ 2.51
CLIP1P30622 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC30.72■■■□□ 2.51
CLIP1P30622 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CLIP1P30622 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
CLIP1P30622 AC092338.2-201ENST00000568827 1415 ntBASIC30.72■■■□□ 2.51
CLIP1P30622 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC30.72■■■□□ 2.51
CLIP1P30622 TSPY23P-201ENST00000440136 739 ntBASIC30.72■■■□□ 2.51
CLIP1P30622 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC30.72■■■□□ 2.51
CLIP1P30622 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
CLIP1P30622 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
CLIP1P30622 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CLIP1P30622 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC30.71■■■□□ 2.51
CLIP1P30622 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC30.71■■■□□ 2.51
CLIP1P30622 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC30.71■■■□□ 2.51
CLIP1P30622 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC30.71■■■□□ 2.51
CLIP1P30622 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC30.71■■■□□ 2.51
CLIP1P30622 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CLIP1P30622 SLC25A1P2-201ENST00000430693 912 ntBASIC30.71■■■□□ 2.51
CLIP1P30622 DUX4L26-201ENST00000489078 1255 ntBASIC30.71■■■□□ 2.51
CLIP1P30622 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC30.71■■■□□ 2.51
CLIP1P30622 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC30.71■■■□□ 2.51
CLIP1P30622 CFL2-205ENST00000555765 632 ntTSL 2 BASIC30.71■■■□□ 2.51
CLIP1P30622 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CLIP1P30622 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
CLIP1P30622 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CLIP1P30622 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CLIP1P30622 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC30.71■■■□□ 2.51
CLIP1P30622 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CLIP1P30622 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms