Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 AL390719.1-204ENST00000412397 1219 ntBASIC14.72□□□□□ -0.05
HLA-DMBP28068 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HLA-DMBP28068 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HLA-DMBP28068 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 ABHD17AP1-201ENST00000358206 933 ntBASIC14.71□□□□□ -0.05
HLA-DMBP28068 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 TSPY20P-201ENST00000450910 630 ntBASIC14.71□□□□□ -0.05
HLA-DMBP28068 AC097658.1-201ENST00000475555 843 ntBASIC14.71□□□□□ -0.05
HLA-DMBP28068 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 RNA5SP413-201ENST00000516373 109 ntBASIC14.71□□□□□ -0.05
HLA-DMBP28068 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 AC005829.2-201ENST00000571422 1056 ntBASIC14.71□□□□□ -0.05
HLA-DMBP28068 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 TBCB-214ENST00000629269 413 ntTSL 5 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HLA-DMBP28068 AL161938.1-201ENST00000569833 2180 ntBASIC14.71□□□□□ -0.05
HLA-DMBP28068 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC14.71□□□□□ -0.05
HLA-DMBP28068 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HLA-DMBP28068 TEX21P-204ENST00000641479 1693 ntBASIC14.71□□□□□ -0.06
HLA-DMBP28068 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HLA-DMBP28068 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HLA-DMBP28068 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC14.71□□□□□ -0.06
HLA-DMBP28068 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HLA-DMBP28068 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DMBP28068 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DMBP28068 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DMBP28068 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DMBP28068 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DMBP28068 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 RER1-204ENST00000378518 522 ntTSL 3 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DMBP28068 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DMBP28068 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DMBP28068 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms