Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.43■□□□□ 0.86
BDNFP23560 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
BDNFP23560 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BDNFP23560 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
BDNFP23560 AC125437.2-201ENST00000625180 2167 ntBASIC20.42■□□□□ 0.86
BDNFP23560 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.42■□□□□ 0.86
BDNFP23560 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.42■□□□□ 0.86
BDNFP23560 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BDNFP23560 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BDNFP23560 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BDNFP23560 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BDNFP23560 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
BDNFP23560 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BDNFP23560 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BDNFP23560 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.42■□□□□ 0.86
BDNFP23560 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.42■□□□□ 0.86
BDNFP23560 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BDNFP23560 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.42■□□□□ 0.86
BDNFP23560 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.42■□□□□ 0.86
BDNFP23560 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.42■□□□□ 0.86
BDNFP23560 SLC25A1P4-201ENST00000567977 778 ntBASIC20.42■□□□□ 0.86
BDNFP23560 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.42■□□□□ 0.86
BDNFP23560 AP000692.2-201ENST00000608391 879 ntBASIC20.42■□□□□ 0.86
BDNFP23560 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.42■□□□□ 0.86
BDNFP23560 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.42■□□□□ 0.86
BDNFP23560 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BDNFP23560 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BDNFP23560 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.42■□□□□ 0.86
BDNFP23560 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.42■□□□□ 0.86
BDNFP23560 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.42■□□□□ 0.86
BDNFP23560 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
BDNFP23560 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
BDNFP23560 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BDNFP23560 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BDNFP23560 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
BDNFP23560 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
BDNFP23560 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.41■□□□□ 0.86
BDNFP23560 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BDNFP23560 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
BDNFP23560 CRYGFP-201ENST00000418459 633 ntBASIC20.41■□□□□ 0.86
BDNFP23560 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.41■□□□□ 0.86
BDNFP23560 FAM207BP-201ENST00000447172 505 ntBASIC20.41■□□□□ 0.86
BDNFP23560 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.41■□□□□ 0.86
BDNFP23560 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.41■□□□□ 0.86
BDNFP23560 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.41■□□□□ 0.86
BDNFP23560 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.41■□□□□ 0.86
BDNFP23560 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.41■□□□□ 0.86
BDNFP23560 AC012306.2-201ENST00000609350 630 ntBASIC20.41■□□□□ 0.86
BDNFP23560 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.41■□□□□ 0.86
BDNFP23560 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
BDNFP23560 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BDNFP23560 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
BDNFP23560 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.41■□□□□ 0.86
BDNFP23560 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BDNFP23560 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BDNFP23560 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BDNFP23560 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.4■□□□□ 0.86
BDNFP23560 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
BDNFP23560 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
BDNFP23560 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BDNFP23560 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
BDNFP23560 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BDNFP23560 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
BDNFP23560 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
BDNFP23560 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
BDNFP23560 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.4■□□□□ 0.86
BDNFP23560 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.4■□□□□ 0.86
BDNFP23560 KRT8P41-201ENST00000533985 1514 ntBASIC20.4■□□□□ 0.86
BDNFP23560 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.4■□□□□ 0.86
BDNFP23560 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
BDNFP23560 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
BDNFP23560 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
BDNFP23560 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
BDNFP23560 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.4■□□□□ 0.86
BDNFP23560 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
BDNFP23560 AC097493.4-201ENST00000641197 219 ntBASIC20.4■□□□□ 0.86
BDNFP23560 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.39■□□□□ 0.86
BDNFP23560 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
BDNFP23560 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
BDNFP23560 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
BDNFP23560 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.39■□□□□ 0.85
BDNFP23560 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.39■□□□□ 0.85
BDNFP23560 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
BDNFP23560 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
BDNFP23560 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.39■□□□□ 0.85
BDNFP23560 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.39■□□□□ 0.85
BDNFP23560 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.39■□□□□ 0.85
BDNFP23560 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.39■□□□□ 0.85
BDNFP23560 NAPSB-206ENST00000562112 1266 ntBASIC20.39■□□□□ 0.85
BDNFP23560 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.39■□□□□ 0.85
BDNFP23560 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
BDNFP23560 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
BDNFP23560 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.39■□□□□ 0.85
BDNFP23560 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.39■□□□□ 0.85
BDNFP23560 AC104417.2-201ENST00000562989 1793 ntBASIC20.39■□□□□ 0.85
BDNFP23560 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
BDNFP23560 ZNF815P-204ENST00000434898 1737 ntBASIC20.39■□□□□ 0.85
BDNFP23560 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BDNFP23560 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.38■□□□□ 0.85
BDNFP23560 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms