Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MIR1224-201ENST00000408193 85 ntBASIC18.91■□□□□ 0.62
HOXC4P09017 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.91■□□□□ 0.62
HOXC4P09017 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC4P09017 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
HOXC4P09017 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.91■□□□□ 0.62
HOXC4P09017 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC4P09017 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC4P09017 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC4P09017 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.9■□□□□ 0.62
HOXC4P09017 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC4P09017 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC4P09017 AC112907.3-201ENST00000577781 2400 ntBASIC18.9■□□□□ 0.62
HOXC4P09017 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXC4P09017 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.9■□□□□ 0.62
HOXC4P09017 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.9■□□□□ 0.62
HOXC4P09017 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HOXC4P09017 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HOXC4P09017 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC4P09017 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC4P09017 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.9■□□□□ 0.62
HOXC4P09017 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
HOXC4P09017 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXC4P09017 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC4P09017 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC4P09017 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HOXC4P09017 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.89■□□□□ 0.62
HOXC4P09017 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HOXC4P09017 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC4P09017 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC4P09017 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC4P09017 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC4P09017 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC4P09017 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
HOXC4P09017 LIN28AP1-201ENST00000429574 405 ntBASIC18.89■□□□□ 0.61
HOXC4P09017 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.89■□□□□ 0.61
HOXC4P09017 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC4P09017 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC4P09017 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC4P09017 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC4P09017 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
HOXC4P09017 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC4P09017 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC4P09017 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC4P09017 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 TREX1-205ENST00000625293 1783 ntBASIC18.88■□□□□ 0.61
HOXC4P09017 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
HOXC4P09017 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
HOXC4P09017 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.88■□□□□ 0.61
HOXC4P09017 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.88■□□□□ 0.61
HOXC4P09017 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.88■□□□□ 0.61
HOXC4P09017 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 AC010203.1-204ENST00000548782 407 ntBASIC18.88■□□□□ 0.61
HOXC4P09017 AL512604.3-201ENST00000569583 964 ntBASIC18.88■□□□□ 0.61
HOXC4P09017 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.88■□□□□ 0.61
HOXC4P09017 AC010331.1-201ENST00000611423 582 ntBASIC18.88■□□□□ 0.61
HOXC4P09017 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.88■□□□□ 0.61
HOXC4P09017 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
HOXC4P09017 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.88■□□□□ 0.61
HOXC4P09017 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
HOXC4P09017 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC4P09017 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.87■□□□□ 0.61
HOXC4P09017 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC4P09017 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC4P09017 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC4P09017 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC4P09017 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC4P09017 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC4P09017 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
HOXC4P09017 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC4P09017 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
HOXC4P09017 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.87■□□□□ 0.61
HOXC4P09017 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC4P09017 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC4P09017 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
HOXC4P09017 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.87■□□□□ 0.61
HOXC4P09017 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.87■□□□□ 0.61
HOXC4P09017 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.87■□□□□ 0.61
HOXC4P09017 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.87■□□□□ 0.61
HOXC4P09017 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.87■□□□□ 0.61
HOXC4P09017 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms