Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL1A1P02452 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL1A1P02452 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
COL1A1P02452 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC23.36■■□□□ 1.33
COL1A1P02452 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC23.36■■□□□ 1.33
COL1A1P02452 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL1A1P02452 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL1A1P02452 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL1A1P02452 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL1A1P02452 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL1A1P02452 SLC25A1P2-201ENST00000430693 912 ntBASIC23.36■■□□□ 1.33
COL1A1P02452 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL1A1P02452 CCR12P-201ENST00000446203 998 ntBASIC23.36■■□□□ 1.33
COL1A1P02452 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC23.36■■□□□ 1.33
COL1A1P02452 USF2-205ENST00000594064 1179 ntTSL 2 BASIC23.36■■□□□ 1.33
COL1A1P02452 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
COL1A1P02452 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC23.36■■□□□ 1.33
COL1A1P02452 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL1A1P02452 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
COL1A1P02452 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL1A1P02452 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
COL1A1P02452 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL1A1P02452 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL1A1P02452 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL1A1P02452 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL1A1P02452 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.35■■□□□ 1.33
COL1A1P02452 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL1A1P02452 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC23.35■■□□□ 1.33
COL1A1P02452 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC23.35■■□□□ 1.33
COL1A1P02452 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL1A1P02452 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC23.35■■□□□ 1.33
COL1A1P02452 AC010653.2-201ENST00000623505 997 ntBASIC23.35■■□□□ 1.33
COL1A1P02452 AC116562.4-202ENST00000641738 218 ntBASIC23.35■■□□□ 1.33
COL1A1P02452 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL1A1P02452 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC23.34■■□□□ 1.33
COL1A1P02452 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL1A1P02452 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL1A1P02452 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL1A1P02452 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL1A1P02452 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
COL1A1P02452 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC23.34■■□□□ 1.33
COL1A1P02452 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL1A1P02452 ZNF815P-204ENST00000434898 1737 ntBASIC23.34■■□□□ 1.33
COL1A1P02452 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL1A1P02452 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL1A1P02452 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL1A1P02452 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC23.34■■□□□ 1.33
COL1A1P02452 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
COL1A1P02452 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC23.34■■□□□ 1.33
COL1A1P02452 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC23.34■■□□□ 1.33
COL1A1P02452 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL1A1P02452 METTL23-204ENST00000586752 904 ntTSL 2 BASIC23.34■■□□□ 1.33
COL1A1P02452 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC23.34■■□□□ 1.33
COL1A1P02452 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL1A1P02452 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC23.34■■□□□ 1.33
COL1A1P02452 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL1A1P02452 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL1A1P02452 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC23.33■■□□□ 1.33
COL1A1P02452 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC23.33■■□□□ 1.33
COL1A1P02452 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL1A1P02452 SDHAP1-207ENST00000440850 2000 ntBASIC23.33■■□□□ 1.33
COL1A1P02452 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
COL1A1P02452 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC23.33■■□□□ 1.33
COL1A1P02452 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL1A1P02452 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL1A1P02452 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL1A1P02452 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC23.33■■□□□ 1.33
COL1A1P02452 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC23.33■■□□□ 1.33
COL1A1P02452 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC23.33■■□□□ 1.33
COL1A1P02452 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC23.33■■□□□ 1.33
COL1A1P02452 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC23.33■■□□□ 1.33
COL1A1P02452 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC23.33■■□□□ 1.33
COL1A1P02452 DBP-204ENST00000599385 709 ntTSL 3 BASIC23.33■■□□□ 1.33
COL1A1P02452 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC23.33■■□□□ 1.33
COL1A1P02452 AC125437.2-201ENST00000625180 2167 ntBASIC23.33■■□□□ 1.33
COL1A1P02452 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.33■■□□□ 1.33
COL1A1P02452 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
COL1A1P02452 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
COL1A1P02452 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
COL1A1P02452 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC23.32■■□□□ 1.32
COL1A1P02452 RNF152P1-201ENST00000397754 604 ntBASIC23.32■■□□□ 1.32
COL1A1P02452 AL031133.1-201ENST00000406807 723 ntBASIC23.32■■□□□ 1.32
COL1A1P02452 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL1A1P02452 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL1A1P02452 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC23.32■■□□□ 1.32
COL1A1P02452 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL1A1P02452 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
COL1A1P02452 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL1A1P02452 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC23.32■■□□□ 1.32
COL1A1P02452 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL1A1P02452 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL1A1P02452 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
COL1A1P02452 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC23.32■■□□□ 1.32
COL1A1P02452 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC23.31■■□□□ 1.32
COL1A1P02452 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL1A1P02452 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
COL1A1P02452 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL1A1P02452 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL1A1P02452 YBX1P2-201ENST00000489612 999 ntBASIC23.31■■□□□ 1.32
COL1A1P02452 NMU-205ENST00000511469 756 ntTSL 3 BASIC23.31■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms