Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.95■□□□□ 0.62
VPS4BO75351 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
VPS4BO75351 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
VPS4BO75351 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 AC060766.5-201ENST00000590539 871 ntBASIC18.95■□□□□ 0.62
VPS4BO75351 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS4BO75351 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS4BO75351 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
VPS4BO75351 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4BO75351 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4BO75351 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS4BO75351 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS4BO75351 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4BO75351 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4BO75351 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
VPS4BO75351 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4BO75351 SNORA78-201ENST00000459373 127 ntBASIC18.94■□□□□ 0.62
VPS4BO75351 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
VPS4BO75351 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS4BO75351 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4BO75351 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.94■□□□□ 0.62
VPS4BO75351 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS4BO75351 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
VPS4BO75351 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4BO75351 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS4BO75351 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
VPS4BO75351 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
VPS4BO75351 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS4BO75351 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4BO75351 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS4BO75351 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS4BO75351 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS4BO75351 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4BO75351 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
VPS4BO75351 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS4BO75351 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4BO75351 AC093503.3-201ENST00000624917 2352 ntBASIC18.93■□□□□ 0.62
VPS4BO75351 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
VPS4BO75351 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4BO75351 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4BO75351 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4BO75351 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.93■□□□□ 0.62
VPS4BO75351 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS4BO75351 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4BO75351 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4BO75351 HLA-B-256ENST00000639848 1089 ntBASIC18.93■□□□□ 0.62
VPS4BO75351 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS4BO75351 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS4BO75351 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.93■□□□□ 0.62
VPS4BO75351 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4BO75351 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4BO75351 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS4BO75351 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS4BO75351 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS4BO75351 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.93■□□□□ 0.62
VPS4BO75351 AC120498.9-201ENST00000339021 3867 ntBASIC18.93■□□□□ 0.62
VPS4BO75351 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.92■□□□□ 0.62
VPS4BO75351 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS4BO75351 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
VPS4BO75351 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS4BO75351 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS4BO75351 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS4BO75351 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 KRT18P21-201ENST00000515767 1272 ntBASIC18.92■□□□□ 0.62
VPS4BO75351 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS4BO75351 AC008403.3-201ENST00000598924 454 ntBASIC18.92■□□□□ 0.62
VPS4BO75351 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS4BO75351 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
VPS4BO75351 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms