Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 SCARNA10-201ENST00000459255 330 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 RPAP2P1-201ENST00000603626 1168 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 AL139022.2-201ENST00000606934 443 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 AL133243.1-201ENST00000614487 366 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS28Q9UK41 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS28Q9UK41 AL391684.1-202ENST00000641293 1636 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS28Q9UK41 KARSP3-201ENST00000571212 1504 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 AC135352.1-201ENST00000506173 1418 ntBASIC4.71□□□□□ -1.66
VPS28Q9UK41 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS28Q9UK41 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS28Q9UK41 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS28Q9UK41 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC025125.1-201ENST00000624743 1922 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS28Q9UK41 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 OR1L1-202ENST00000373686 1083 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS28Q9UK41 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS28Q9UK41 FAR2P2-201ENST00000413041 594 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC009480.2-201ENST00000422916 432 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AL354692.1-201ENST00000423044 315 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 FAR2P4-202ENST00000425399 584 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 RPL23AP1-201ENST00000428990 471 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC068287.1-201ENST00000430283 295 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 HSFY7P-201ENST00000432672 318 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS28Q9UK41 HSFY8P-201ENST00000437934 318 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 HSFY5P-201ENST00000453726 309 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC244505.3-201ENST00000454598 187 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 MTND2P28-201ENST00000457540 1044 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC008837.1-201ENST00000511513 412 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 RAB9BP1-201ENST00000519581 626 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC010376.1-201ENST00000522101 334 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 CYCSP28-201ENST00000534284 321 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS28Q9UK41 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 YWHAZP1-201ENST00000556286 722 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC010680.4-201ENST00000605334 543 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 COX6CP4-201ENST00000605798 228 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AP003117.2-201ENST00000606010 545 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC105227.2-201ENST00000615075 605 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 VN1R7P-201ENST00000619242 903 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 FAM157B-203ENST00000639350 358 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS28Q9UK41 EIF2AP4-201ENST00000424793 1781 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
VPS28Q9UK41 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS28Q9UK41 MFSD8-220ENST00000641243 1422 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 ZNF33CP-201ENST00000432492 2030 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 AL592148.3-201ENST00000608771 2646 ntBASIC4.7□□□□□ -1.66
VPS28Q9UK41 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS28Q9UK41 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
VPS28Q9UK41 AC011978.2-201ENST00000569835 2054 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC006971.1-201ENST00000407916 4486 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC111188.2-201ENST00000529697 1387 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
VPS28Q9UK41 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 RNU6-984P-201ENST00000363236 109 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 RNU6-619P-201ENST00000365146 108 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 MIR129-1-201ENST00000384972 72 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 TMSB4XP8-201ENST00000402089 135 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 SFR1P1-201ENST00000403720 688 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 TMSB4XP6-201ENST00000415187 135 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 RPS15AP40-201ENST00000419621 391 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.69□□□□□ -1.66
VPS28Q9UK41 TMSB4XP1-201ENST00000424567 135 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 RPS6P14-201ENST00000425165 719 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AC092634.2-201ENST00000428146 1010 ntBASIC4.69□□□□□ -1.66
VPS28Q9UK41 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms