Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AC063943.1-201ENST00000465434 453 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5□□□□□ -1.61
CCDC140Q96MF4 RN7SL502P-201ENST00000481857 290 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 RN7SL413P-201ENST00000482700 297 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AC068305.1-201ENST00000497406 726 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5□□□□□ -1.61
CCDC140Q96MF4 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 HSPD1P15-201ENST00000505573 1122 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC5□□□□□ -1.61
CCDC140Q96MF4 SNORD60.2-201ENST00000516883 86 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC5□□□□□ -1.61
CCDC140Q96MF4 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AL133399.1-201ENST00000527476 298 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AP000857.1-201ENST00000532151 543 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 OR5B10P-201ENST00000532869 642 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AC073916.1-201ENST00000545095 130 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC5□□□□□ -1.61
CCDC140Q96MF4 MIR4301-201ENST00000577203 66 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AC233702.7-202ENST00000582941 211 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AC105224.1-201ENST00000587055 421 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AC044792.1-201ENST00000593294 196 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC5□□□□□ -1.61
CCDC140Q96MF4 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AC103710.2-201ENST00000609912 942 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 AC211486.4-201ENST00000621495 113 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AL136313.1-201ENST00000624804 202 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 RIOK3P1-201ENST00000418778 1528 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC5□□□□□ -1.61
CCDC140Q96MF4 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5□□□□□ -1.61
CCDC140Q96MF4 DOCK11P1-201ENST00000553480 5932 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
CCDC140Q96MF4 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AL138713.1-201ENST00000624026 2130 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5□□□□□ -1.61
CCDC140Q96MF4 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5□□□□□ -1.61
CCDC140Q96MF4 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5□□□□□ -1.61
CCDC140Q96MF4 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC140Q96MF4 DMD-211ENST00000378707 7410 ntTSL 5 BASIC5□□□□□ -1.61
CCDC140Q96MF4 AC105235.1-201ENST00000623208 1816 ntBASIC5□□□□□ -1.61
CCDC140Q96MF4 AC022034.1-201ENST00000512867 2156 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 RNA5SP350-201ENST00000363298 111 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 RNU6-1078P-201ENST00000364522 103 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 RNA5SP85-201ENST00000365378 119 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 Y_RNA.493-201ENST00000384422 102 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 RNU11-4P-201ENST00000391149 133 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC007390.1-201ENST00000415722 356 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AL133482.1-201ENST00000415988 498 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 MRPS21P5-201ENST00000417885 231 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 PDCL2P1-201ENST00000419302 352 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AL353678.1-201ENST00000422735 741 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 RPS12P5-201ENST00000423449 371 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 EZH2P1-201ENST00000431167 291 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 SUMO2P3-201ENST00000438311 288 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 DDX3P2-201ENST00000446138 111 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 RPL7P12-201ENST00000446719 750 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC015524.1-201ENST00000491585 472 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC018645.1-201ENST00000505003 109 ntBASIC4.99□□□□□ -1.61
CCDC140Q96MF4 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC140Q96MF4 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 149.6 ms