Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 MAPK10-253ENST00000641010 4072 ntBASIC4.45□□□□□ -1.7
SCN4AP35499 AL353743.1-202ENST00000431724 1695 ntBASIC4.45□□□□□ -1.7
SCN4AP35499 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SCN4AP35499 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
SCN4AP35499 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
SCN4AP35499 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.44□□□□□ -1.7
SCN4AP35499 AL034403.1-201ENST00000399414 885 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SCN4AP35499 USP9YP36-201ENST00000424581 829 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 USP9YP31-201ENST00000431405 881 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 YWHAEP5-201ENST00000431545 765 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.44□□□□□ -1.7
SCN4AP35499 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.44□□□□□ -1.7
SCN4AP35499 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
SCN4AP35499 Z75741.1-201ENST00000446793 314 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 RSL24D1P3-201ENST00000449255 495 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 OR52Y1P-201ENST00000452418 828 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 AC093663.1-201ENST00000497190 394 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 RFPL4AP5-201ENST00000514977 504 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.44□□□□□ -1.7
SCN4AP35499 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.44□□□□□ -1.7
SCN4AP35499 EIF4BP1-201ENST00000554881 351 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 MIR4672-201ENST00000583126 81 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 AL139395.1-201ENST00000603662 160 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.44□□□□□ -1.7
SCN4AP35499 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
SCN4AP35499 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.44□□□□□ -1.7
SCN4AP35499 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
SCN4AP35499 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SCN4AP35499 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SCN4AP35499 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
SCN4AP35499 AC092435.4-201ENST00000623012 4159 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.44□□□□□ -1.7
SCN4AP35499 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SCN4AP35499 SNORD74.4-201ENST00000364129 80 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.44□□□□□ -1.7
SCN4AP35499 AL671855.1-201ENST00000446875 1203 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.44□□□□□ -1.7
SCN4AP35499 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.44□□□□□ -1.7
SCN4AP35499 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.44□□□□□ -1.7
SCN4AP35499 AL591424.2-201ENST00000617023 128 ntBASIC4.44□□□□□ -1.7
SCN4AP35499 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SCN4AP35499 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SCN4AP35499 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.43□□□□□ -1.7
SCN4AP35499 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.43□□□□□ -1.7
SCN4AP35499 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SCN4AP35499 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SCN4AP35499 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SCN4AP35499 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SCN4AP35499 AC017007.4-201ENST00000503353 1352 ntBASIC4.43□□□□□ -1.7
SCN4AP35499 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SCN4AP35499 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
SCN4AP35499 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
SCN4AP35499 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
SCN4AP35499 RNU6-673P-201ENST00000365084 104 ntBASIC4.43□□□□□ -1.7
SCN4AP35499 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SCN4AP35499 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
SCN4AP35499 AC245054.1-201ENST00000420944 258 ntBASIC4.43□□□□□ -1.7
SCN4AP35499 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.43□□□□□ -1.7
SCN4AP35499 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SCN4AP35499 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.43□□□□□ -1.7
SCN4AP35499 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.43□□□□□ -1.7
SCN4AP35499 Vault.1-201ENST00000516474 102 ntBASIC4.43□□□□□ -1.7
SCN4AP35499 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.43□□□□□ -1.7
SCN4AP35499 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.43□□□□□ -1.7
SCN4AP35499 AC008011.1-201ENST00000545989 227 ntBASIC4.43□□□□□ -1.7
SCN4AP35499 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.43□□□□□ -1.7
SCN4AP35499 AC006504.3-201ENST00000586818 523 ntBASIC4.43□□□□□ -1.7
SCN4AP35499 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SCN4AP35499 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SCN4AP35499 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SCN4AP35499 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SCN4AP35499 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.42□□□□□ -1.7
SCN4AP35499 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SCN4AP35499 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SCN4AP35499 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.42□□□□□ -1.7
SCN4AP35499 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.42□□□□□ -1.7
SCN4AP35499 NANOGP6-201ENST00000429190 847 ntBASIC4.42□□□□□ -1.7
SCN4AP35499 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.42□□□□□ -1.7
SCN4AP35499 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.42□□□□□ -1.7
SCN4AP35499 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.42□□□□□ -1.7
SCN4AP35499 PHBP14-201ENST00000512887 367 ntBASIC4.42□□□□□ -1.7
SCN4AP35499 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.42□□□□□ -1.7
SCN4AP35499 AC011611.1-201ENST00000552179 197 ntBASIC4.42□□□□□ -1.7
SCN4AP35499 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.42□□□□□ -1.7
SCN4AP35499 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.42□□□□□ -1.7
SCN4AP35499 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.42□□□□□ -1.7
SCN4AP35499 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
SCN4AP35499 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.42□□□□□ -1.7
SCN4AP35499 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SCN4AP35499 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SCN4AP35499 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SCN4AP35499 MTCO1P7-201ENST00000419523 1542 ntBASIC4.42□□□□□ -1.7
SCN4AP35499 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SCN4AP35499 RNU1-15P-201ENST00000353977 144 ntBASIC4.42□□□□□ -1.7
SCN4AP35499 U3.19-201ENST00000390893 196 ntBASIC4.42□□□□□ -1.7
SCN4AP35499 TAF9BP1-201ENST00000396646 746 ntBASIC4.42□□□□□ -1.7
SCN4AP35499 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.42□□□□□ -1.7
SCN4AP35499 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms