Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXC9P31274 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC5.21□□□□□ -1.58
HOXC9P31274 AC104662.1-201ENST00000604448 511 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 AL391497.1-201ENST00000608671 547 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 AL391834.1-201ENST00000609609 560 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXC9P31274 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXC9P31274 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXC9P31274 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXC9P31274 CASC19-284ENST00000642142 1868 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXC9P31274 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXC9P31274 AL359715.4-201ENST00000606629 1436 ntBASIC5.21□□□□□ -1.58
HOXC9P31274 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXC9P31274 AC139713.2-215ENST00000641428 5037 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
HOXC9P31274 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXC9P31274 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXC9P31274 RAD1P1-201ENST00000231383 813 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXC9P31274 VDAC2P1-201ENST00000399358 958 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 PEX12P1-201ENST00000400284 1048 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 ZNF602P-201ENST00000405929 924 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXC9P31274 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXC9P31274 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXC9P31274 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.2□□□□□ -1.58
HOXC9P31274 SUMO1P1-201ENST00000497904 306 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 C1GALT1P2-201ENST00000510813 1104 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXC9P31274 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXC9P31274 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXC9P31274 AC068339.2-201ENST00000534395 618 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXC9P31274 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC5.2□□□□□ -1.58
HOXC9P31274 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC5.2□□□□□ -1.58
HOXC9P31274 SNORD39.2-201ENST00000579995 76 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 AC105148.1-201ENST00000604961 409 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 AL031666.3-201ENST00000609320 1006 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 AC012314.7-201ENST00000619693 93 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 AC090617.9-201ENST00000623751 147 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 FRG1DP-201ENST00000635586 771 ntBASIC5.2□□□□□ -1.58
HOXC9P31274 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXC9P31274 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXC9P31274 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.2□□□□□ -1.58
HOXC9P31274 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXC9P31274 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HOXC9P31274 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HOXC9P31274 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.2□□□□□ -1.58
HOXC9P31274 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXC9P31274 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC9P31274 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC9P31274 MAPK10-349ENST00000641767 3661 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 MIR199A2-201ENST00000385289 110 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 ATP5F1P4-201ENST00000397288 746 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 SNORA3C-201ENST00000408792 125 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.19□□□□□ -1.58
HOXC9P31274 AC069282.1-201ENST00000411911 526 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 AC093084.1-201ENST00000424233 687 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.19□□□□□ -1.58
HOXC9P31274 NDUFA5P10-201ENST00000432147 357 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 AL512661.1-201ENST00000434586 1253 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXC9P31274 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC5.19□□□□□ -1.58
HOXC9P31274 AC093716.1-201ENST00000435923 377 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 RPL23AP23-201ENST00000452590 471 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 AC069277.2-201ENST00000454211 432 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 AC005008.1-201ENST00000456151 612 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC5.19□□□□□ -1.58
HOXC9P31274 RPL21P11-201ENST00000461458 483 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 RPL7P49-201ENST00000471402 708 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 NPM1P17-201ENST00000479221 602 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 NPM1P29-201ENST00000483112 803 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.19□□□□□ -1.58
HOXC9P31274 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC5.19□□□□□ -1.58
HOXC9P31274 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.19□□□□□ -1.58
HOXC9P31274 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC5.19□□□□□ -1.58
HOXC9P31274 AC244505.7-201ENST00000599675 272 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 AC019131.2-201ENST00000609071 870 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 AC004241.3-201ENST00000611728 517 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 AC015908.5-201ENST00000623289 343 ntBASIC5.19□□□□□ -1.58
HOXC9P31274 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC5.19□□□□□ -1.58
HOXC9P31274 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC9P31274 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
HOXC9P31274 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HOXC9P31274 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC9P31274 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXC9P31274 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXC9P31274 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC9P31274 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXC9P31274 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
HOXC9P31274 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXC9P31274 MIR1251-201ENST00000408552 70 ntBASIC5.18□□□□□ -1.58
HOXC9P31274 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXC9P31274 RPL7AP73-201ENST00000413490 353 ntBASIC5.18□□□□□ -1.58
HOXC9P31274 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXC9P31274 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXC9P31274 MTND4LP13-201ENST00000425022 298 ntBASIC5.18□□□□□ -1.58
HOXC9P31274 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXC9P31274 HMGN2P31-201ENST00000432430 273 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms