Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
COL6A3P12111 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
COL6A3P12111 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
COL6A3P12111 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC3.66□□□□□ -1.82
COL6A3P12111 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.66□□□□□ -1.82
COL6A3P12111 HMGN2P7-201ENST00000456186 273 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 AC126389.1-201ENST00000477436 290 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 RPL7P38-201ENST00000488396 739 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 RPL7P24-201ENST00000493052 752 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 AC108022.1-201ENST00000493466 478 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 AL358913.1-201ENST00000554342 121 ntBASIC3.66□□□□□ -1.82
COL6A3P12111 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.66□□□□□ -1.82
COL6A3P12111 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.66□□□□□ -1.82
COL6A3P12111 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC3.66□□□□□ -1.82
COL6A3P12111 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
COL6A3P12111 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC3.66□□□□□ -1.82
COL6A3P12111 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A3P12111 MIR1287-201ENST00000408492 90 ntBASIC3.65□□□□□ -1.82
COL6A3P12111 RNU4-47P-201ENST00000410876 114 ntBASIC3.65□□□□□ -1.82
COL6A3P12111 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.65□□□□□ -1.82
COL6A3P12111 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.65□□□□□ -1.82
COL6A3P12111 RN7SL863P-201ENST00000462370 296 ntBASIC3.65□□□□□ -1.82
COL6A3P12111 AC090286.3-201ENST00000573133 187 ntBASIC3.65□□□□□ -1.82
COL6A3P12111 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
COL6A3P12111 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
COL6A3P12111 Y_RNA.508-201ENST00000384502 114 ntBASIC3.65□□□□□ -1.83
COL6A3P12111 VTI1BP4-201ENST00000427516 527 ntBASIC3.65□□□□□ -1.83
COL6A3P12111 AC017037.2-201ENST00000513850 890 ntBASIC3.65□□□□□ -1.83
COL6A3P12111 RNA5SP249-201ENST00000516127 99 ntBASIC3.65□□□□□ -1.83
COL6A3P12111 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC3.65□□□□□ -1.83
COL6A3P12111 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.65□□□□□ -1.83
COL6A3P12111 NELL2-211ENST00000548826 559 ntTSL 2 BASIC3.65□□□□□ -1.83
COL6A3P12111 COX6CP4-201ENST00000605798 228 ntBASIC3.65□□□□□ -1.83
COL6A3P12111 AC015802.5-201ENST00000607478 399 ntBASIC3.65□□□□□ -1.83
COL6A3P12111 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC3.65□□□□□ -1.83
COL6A3P12111 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL6A3P12111 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL6A3P12111 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL6A3P12111 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC3.65□□□□□ -1.83
COL6A3P12111 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
COL6A3P12111 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC3.65□□□□□ -1.83
COL6A3P12111 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL6A3P12111 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
COL6A3P12111 FRG1CP-201ENST00000358464 769 ntBASIC3.65□□□□□ -1.83
COL6A3P12111 AC073069.1-201ENST00000428657 441 ntBASIC3.65□□□□□ -1.83
COL6A3P12111 AL356535.1-201ENST00000440335 398 ntBASIC3.65□□□□□ -1.83
COL6A3P12111 AC104662.1-201ENST00000604448 511 ntBASIC3.65□□□□□ -1.83
COL6A3P12111 AC097505.1-201ENST00000610199 565 ntBASIC3.65□□□□□ -1.83
COL6A3P12111 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.65□□□□□ -1.83
COL6A3P12111 AP000553.6-201ENST00000641242 118 ntBASIC3.65□□□□□ -1.83
COL6A3P12111 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL6A3P12111 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC3.64□□□□□ -1.83
COL6A3P12111 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
COL6A3P12111 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.64□□□□□ -1.83
COL6A3P12111 UBE2V2P4-201ENST00000447495 259 ntBASIC3.64□□□□□ -1.83
COL6A3P12111 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC3.64□□□□□ -1.83
COL6A3P12111 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.64□□□□□ -1.83
COL6A3P12111 AC004024.1-201ENST00000549244 247 ntBASIC3.64□□□□□ -1.83
COL6A3P12111 AC007599.1-201ENST00000568688 1174 ntBASIC3.64□□□□□ -1.83
COL6A3P12111 A2MP1-204ENST00000566278 4130 ntBASIC3.64□□□□□ -1.83
COL6A3P12111 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
COL6A3P12111 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL6A3P12111 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC3.64□□□□□ -1.83
COL6A3P12111 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.64□□□□□ -1.83
COL6A3P12111 PCBP2P3-201ENST00000509726 843 ntBASIC3.64□□□□□ -1.83
COL6A3P12111 AC018442.3-201ENST00000523025 183 ntBASIC3.64□□□□□ -1.83
COL6A3P12111 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
COL6A3P12111 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC3.64□□□□□ -1.83
COL6A3P12111 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.64□□□□□ -1.83
COL6A3P12111 SNORA62.6-201ENST00000606322 83 ntBASIC3.64□□□□□ -1.83
COL6A3P12111 MKKS-203ENST00000609375 882 ntTSL 2 BASIC3.64□□□□□ -1.83
COL6A3P12111 AC092184.1-201ENST00000625042 715 ntBASIC3.64□□□□□ -1.83
COL6A3P12111 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC3.64□□□□□ -1.83
COL6A3P12111 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
COL6A3P12111 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL6A3P12111 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL6A3P12111 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL6A3P12111 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
COL6A3P12111 Y_RNA.4-201ENST00000362333 112 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC3.63□□□□□ -1.83
COL6A3P12111 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.63□□□□□ -1.83
COL6A3P12111 AL117339.4-201ENST00000608335 7063 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
COL6A3P12111 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
COL6A3P12111 AL356274.2-201ENST00000624379 3752 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 SNORA67.4-201ENST00000384688 142 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.63□□□□□ -1.83
COL6A3P12111 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.63□□□□□ -1.83
COL6A3P12111 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 126.7 ms