Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC107021.2-201ENST00000567714 2095 ntBASIC6.23□□□□□ -1.41
MSX1P28360 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
MSX1P28360 AL139276.1-201ENST00000311910 1001 ntBASIC6.23□□□□□ -1.41
MSX1P28360 RNA5SP152-201ENST00000365184 110 ntBASIC6.23□□□□□ -1.41
MSX1P28360 Y_RNA.364-201ENST00000365532 101 ntBASIC6.23□□□□□ -1.41
MSX1P28360 RNU6-1040P-201ENST00000383974 107 ntBASIC6.23□□□□□ -1.41
MSX1P28360 ARF4P3-201ENST00000397387 509 ntBASIC6.23□□□□□ -1.41
MSX1P28360 SSXP10-201ENST00000402595 565 ntBASIC6.23□□□□□ -1.41
MSX1P28360 RPS4XP9-201ENST00000405151 780 ntBASIC6.23□□□□□ -1.41
MSX1P28360 CYCSP17-201ENST00000407870 315 ntBASIC6.23□□□□□ -1.41
MSX1P28360 RNU6-954P-201ENST00000411355 107 ntBASIC6.23□□□□□ -1.41
MSX1P28360 ALDH7A1P4-201ENST00000412255 178 ntBASIC6.23□□□□□ -1.41
MSX1P28360 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.23□□□□□ -1.41
MSX1P28360 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX1P28360 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC6.23□□□□□ -1.41
MSX1P28360 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX1P28360 NRBF2P3-201ENST00000432731 865 ntBASIC6.23□□□□□ -1.41
MSX1P28360 AC093156.1-201ENST00000440382 670 ntBASIC6.23□□□□□ -1.41
MSX1P28360 RPS10P18-201ENST00000442662 495 ntBASIC6.23□□□□□ -1.41
MSX1P28360 CRYGGP-201ENST00000443337 145 ntBASIC6.23□□□□□ -1.41
MSX1P28360 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX1P28360 RPL21P23-201ENST00000446654 460 ntBASIC6.23□□□□□ -1.41
MSX1P28360 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX1P28360 AC104634.1-201ENST00000452720 462 ntBASIC6.23□□□□□ -1.41
MSX1P28360 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX1P28360 AC128713.1-201ENST00000471495 306 ntBASIC6.23□□□□□ -1.41
MSX1P28360 AC104564.1-201ENST00000493028 407 ntBASIC6.23□□□□□ -1.41
MSX1P28360 RN7SL187P-201ENST00000495587 303 ntBASIC6.23□□□□□ -1.41
MSX1P28360 RPS26P24-201ENST00000497656 331 ntBASIC6.23□□□□□ -1.41
MSX1P28360 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
MSX1P28360 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX1P28360 RN7SKP98-201ENST00000517070 156 ntBASIC6.23□□□□□ -1.41
MSX1P28360 RNA5SP454-201ENST00000517231 127 ntBASIC6.23□□□□□ -1.41
MSX1P28360 HMGB1P41-201ENST00000520234 440 ntBASIC6.23□□□□□ -1.41
MSX1P28360 AC103843.2-201ENST00000530523 682 ntBASIC6.23□□□□□ -1.41
MSX1P28360 AC092375.1-201ENST00000550410 637 ntBASIC6.23□□□□□ -1.41
MSX1P28360 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.23□□□□□ -1.41
MSX1P28360 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.23□□□□□ -1.41
MSX1P28360 AC026898.1-201ENST00000586404 571 ntBASIC6.23□□□□□ -1.41
MSX1P28360 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC6.23□□□□□ -1.41
MSX1P28360 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC6.23□□□□□ -1.41
MSX1P28360 BNIP3P25-201ENST00000596023 559 ntBASIC6.23□□□□□ -1.41
MSX1P28360 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX1P28360 AC011500.1-201ENST00000601963 469 ntBASIC6.23□□□□□ -1.41
MSX1P28360 AC007485.1-201ENST00000616755 206 ntBASIC6.23□□□□□ -1.41
MSX1P28360 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX1P28360 CASC19-284ENST00000642142 1868 ntBASIC6.23□□□□□ -1.41
MSX1P28360 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 API5-210ENST00000534600 1760 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX1P28360 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.23□□□□□ -1.41
MSX1P28360 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC6.23□□□□□ -1.41
MSX1P28360 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.23□□□□□ -1.41
MSX1P28360 MAPK10-287ENST00000641217 3037 ntBASIC6.23□□□□□ -1.41
MSX1P28360 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 Z97989.1-201ENST00000531702 2421 ntBASIC6.23□□□□□ -1.41
MSX1P28360 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX1P28360 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX1P28360 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
MSX1P28360 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
MSX1P28360 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.22□□□□□ -1.41
MSX1P28360 FER-202ENST00000438717 1531 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX1P28360 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
MSX1P28360 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX1P28360 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
MSX1P28360 RNA5SP382-201ENST00000363355 112 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AC026310.1-201ENST00000396004 378 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AL356421.1-201ENST00000403255 413 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
MSX1P28360 RNU2-29P-201ENST00000410423 189 ntBASIC6.22□□□□□ -1.41
MSX1P28360 HNRNPDLP1-201ENST00000412834 550 ntBASIC6.22□□□□□ -1.41
MSX1P28360 OR6C66P-201ENST00000414917 930 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AC012065.2-201ENST00000421295 375 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AC092832.1-201ENST00000422934 400 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC6.22□□□□□ -1.41
MSX1P28360 BRWD1P3-201ENST00000428816 390 ntBASIC6.22□□□□□ -1.41
MSX1P28360 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.22□□□□□ -1.41
MSX1P28360 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC6.22□□□□□ -1.41
MSX1P28360 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC6.22□□□□□ -1.41
MSX1P28360 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC6.22□□□□□ -1.41
MSX1P28360 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC6.22□□□□□ -1.41
MSX1P28360 RPL7AP71-201ENST00000451120 739 ntBASIC6.22□□□□□ -1.41
MSX1P28360 RPS29P15-201ENST00000458329 171 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX1P28360 AC079168.1-201ENST00000458741 345 ntBASIC6.22□□□□□ -1.41
MSX1P28360 RNU7-182P-201ENST00000459009 62 ntBASIC6.22□□□□□ -1.41
MSX1P28360 RN7SL83P-201ENST00000468131 297 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AC022415.1-202ENST00000486612 523 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC6.22□□□□□ -1.41
MSX1P28360 RPS27P27-201ENST00000498779 255 ntBASIC6.22□□□□□ -1.41
MSX1P28360 TRBVA-201ENST00000498804 316 ntBASIC6.22□□□□□ -1.41
MSX1P28360 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.22□□□□□ -1.41
MSX1P28360 AL118558.2-201ENST00000556294 238 ntBASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms