Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC012603.1-201ENST00000606424 528 ntBASIC3.63□□□□□ -1.83
COL5A1P20908 AC079684.1-201ENST00000621405 437 ntBASIC3.63□□□□□ -1.83
COL5A1P20908 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.63□□□□□ -1.83
COL5A1P20908 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A1P20908 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A1P20908 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A1P20908 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.63□□□□□ -1.83
COL5A1P20908 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A1P20908 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.63□□□□□ -1.83
COL5A1P20908 BDP1P-201ENST00000582658 1990 ntBASIC3.63□□□□□ -1.83
COL5A1P20908 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A1P20908 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC3.63□□□□□ -1.83
COL5A1P20908 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A1P20908 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
COL5A1P20908 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
COL5A1P20908 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A1P20908 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
COL5A1P20908 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A1P20908 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC3.63□□□□□ -1.83
COL5A1P20908 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC3.63□□□□□ -1.83
COL5A1P20908 AC068254.2-201ENST00000623938 3577 ntBASIC3.63□□□□□ -1.83
COL5A1P20908 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A1P20908 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.63□□□□□ -1.83
COL5A1P20908 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A1P20908 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A1P20908 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
COL5A1P20908 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A1P20908 Y_RNA.510-201ENST00000384511 114 ntBASIC3.63□□□□□ -1.83
COL5A1P20908 AL603766.1-201ENST00000407763 664 ntBASIC3.63□□□□□ -1.83
COL5A1P20908 YWHAEP5-201ENST00000431545 765 ntBASIC3.63□□□□□ -1.83
COL5A1P20908 AC092641.1-201ENST00000440229 772 ntBASIC3.63□□□□□ -1.83
COL5A1P20908 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.63□□□□□ -1.83
COL5A1P20908 CYCSP35-201ENST00000451978 304 ntBASIC3.63□□□□□ -1.83
COL5A1P20908 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC3.63□□□□□ -1.83
COL5A1P20908 SNORD105B-201ENST00000458770 79 ntBASIC3.63□□□□□ -1.83
COL5A1P20908 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.63□□□□□ -1.83
COL5A1P20908 RANP9-201ENST00000519957 271 ntBASIC3.63□□□□□ -1.83
COL5A1P20908 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC3.63□□□□□ -1.83
COL5A1P20908 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.63□□□□□ -1.83
COL5A1P20908 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.63□□□□□ -1.83
COL5A1P20908 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.63□□□□□ -1.83
COL5A1P20908 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL5A1P20908 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL5A1P20908 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.62□□□□□ -1.83
COL5A1P20908 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC3.62□□□□□ -1.83
COL5A1P20908 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.62□□□□□ -1.83
COL5A1P20908 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL5A1P20908 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC3.62□□□□□ -1.83
COL5A1P20908 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
COL5A1P20908 SNORD9-201ENST00000362566 104 ntBASIC3.62□□□□□ -1.83
COL5A1P20908 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.62□□□□□ -1.83
COL5A1P20908 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.62□□□□□ -1.83
COL5A1P20908 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.62□□□□□ -1.83
COL5A1P20908 ATP5HP2-201ENST00000433885 485 ntBASIC3.62□□□□□ -1.83
COL5A1P20908 RPL7P28-201ENST00000437739 740 ntBASIC3.62□□□□□ -1.83
COL5A1P20908 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC3.62□□□□□ -1.83
COL5A1P20908 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.62□□□□□ -1.83
COL5A1P20908 AC084759.1-201ENST00000561168 290 ntBASIC3.62□□□□□ -1.83
COL5A1P20908 AL133457.1-201ENST00000564251 987 ntBASIC3.62□□□□□ -1.83
COL5A1P20908 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.62□□□□□ -1.83
COL5A1P20908 MIR8057-201ENST00000620957 69 ntBASIC3.62□□□□□ -1.83
COL5A1P20908 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
COL5A1P20908 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.62□□□□□ -1.83
COL5A1P20908 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.62□□□□□ -1.83
COL5A1P20908 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
COL5A1P20908 IPO8P1-201ENST00000455509 3109 ntBASIC3.61□□□□□ -1.83
COL5A1P20908 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.61□□□□□ -1.83
COL5A1P20908 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
COL5A1P20908 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL5A1P20908 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.61□□□□□ -1.83
COL5A1P20908 AC233263.6-201ENST00000631132 1963 ntBASIC3.61□□□□□ -1.83
COL5A1P20908 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
COL5A1P20908 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.61□□□□□ -1.83
COL5A1P20908 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC3.61□□□□□ -1.83
COL5A1P20908 MTCO1P45-201ENST00000431457 267 ntBASIC3.61□□□□□ -1.83
COL5A1P20908 AC005019.1-201ENST00000436455 431 ntBASIC3.61□□□□□ -1.83
COL5A1P20908 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.61□□□□□ -1.83
COL5A1P20908 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.61□□□□□ -1.83
COL5A1P20908 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC3.61□□□□□ -1.83
COL5A1P20908 OR7E13P-201ENST00000526052 910 ntBASIC3.61□□□□□ -1.83
COL5A1P20908 AC022882.1-201ENST00000532142 501 ntBASIC3.61□□□□□ -1.83
COL5A1P20908 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.61□□□□□ -1.83
COL5A1P20908 AC010653.1-201ENST00000571108 881 ntBASIC3.61□□□□□ -1.83
COL5A1P20908 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.61□□□□□ -1.83
COL5A1P20908 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.61□□□□□ -1.83
COL5A1P20908 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL5A1P20908 AC119674.1-207ENST00000641355 633 ntBASIC3.61□□□□□ -1.83
COL5A1P20908 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL5A1P20908 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
COL5A1P20908 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
COL5A1P20908 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL5A1P20908 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL5A1P20908 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL5A1P20908 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL5A1P20908 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.61□□□□□ -1.83
COL5A1P20908 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
COL5A1P20908 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
COL5A1P20908 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC3.61□□□□□ -1.83
COL5A1P20908 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.61□□□□□ -1.83
COL5A1P20908 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 132.3 ms