Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SPTA1P02549 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SPTA1P02549 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SPTA1P02549 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC3.42□□□□□ -1.86
SPTA1P02549 CCRL1P1-201ENST00000449542 1053 ntBASIC3.42□□□□□ -1.86
SPTA1P02549 AC022695.1-201ENST00000522089 237 ntBASIC3.42□□□□□ -1.86
SPTA1P02549 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.42□□□□□ -1.86
SPTA1P02549 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.42□□□□□ -1.86
SPTA1P02549 AL606834.2-201ENST00000602954 668 ntBASIC3.42□□□□□ -1.86
SPTA1P02549 AL353743.1-202ENST00000431724 1695 ntBASIC3.42□□□□□ -1.86
SPTA1P02549 AL133268.1-201ENST00000405676 1401 ntBASIC3.42□□□□□ -1.86
SPTA1P02549 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
SPTA1P02549 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.42□□□□□ -1.86
SPTA1P02549 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SPTA1P02549 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SPTA1P02549 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SPTA1P02549 SNORD9-201ENST00000362566 104 ntBASIC3.42□□□□□ -1.86
SPTA1P02549 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.42□□□□□ -1.86
SPTA1P02549 VDAC1P9-201ENST00000412766 841 ntBASIC3.42□□□□□ -1.86
SPTA1P02549 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.42□□□□□ -1.86
SPTA1P02549 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.42□□□□□ -1.86
SPTA1P02549 AC090013.1-201ENST00000485147 480 ntBASIC3.42□□□□□ -1.86
SPTA1P02549 AC093663.1-201ENST00000497190 394 ntBASIC3.42□□□□□ -1.86
SPTA1P02549 AC008694.2-201ENST00000517591 306 ntBASIC3.42□□□□□ -1.86
SPTA1P02549 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SPTA1P02549 AC119674.1-207ENST00000641355 633 ntBASIC3.42□□□□□ -1.86
SPTA1P02549 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
SPTA1P02549 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.42□□□□□ -1.86
SPTA1P02549 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
SPTA1P02549 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.42□□□□□ -1.86
SPTA1P02549 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.42□□□□□ -1.86
SPTA1P02549 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC3.41□□□□□ -1.86
SPTA1P02549 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.41□□□□□ -1.86
SPTA1P02549 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SPTA1P02549 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SPTA1P02549 RNU4-35P-201ENST00000362588 141 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 PGBD4P8-201ENST00000412993 562 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 AC003685.2-201ENST00000422795 395 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC3.41□□□□□ -1.86
SPTA1P02549 SETD6P1-201ENST00000444575 317 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.41□□□□□ -1.86
SPTA1P02549 AC135001.1-201ENST00000544546 283 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 MIR5680-201ENST00000577577 84 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 MIR5004-201ENST00000579078 107 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 TUG1_1.1-201ENST00000610654 145 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.41□□□□□ -1.86
SPTA1P02549 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
SPTA1P02549 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
SPTA1P02549 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC3.41□□□□□ -1.86
SPTA1P02549 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SPTA1P02549 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SPTA1P02549 BCLAF1P2-201ENST00000624956 2609 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC3.41□□□□□ -1.86
SPTA1P02549 U3.19-201ENST00000390893 196 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 RNA5SP247-201ENST00000411181 105 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 RPL7P59-201ENST00000447700 943 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.41□□□□□ -1.86
SPTA1P02549 RNA5SP230-201ENST00000517039 122 ntBASIC3.41□□□□□ -1.86
SPTA1P02549 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC3.41□□□□□ -1.86
SPTA1P02549 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.41□□□□□ -1.86
SPTA1P02549 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SPTA1P02549 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
SPTA1P02549 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
SPTA1P02549 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
SPTA1P02549 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
SPTA1P02549 Y_RNA.466-201ENST00000384294 113 ntBASIC3.4□□□□□ -1.86
SPTA1P02549 ATP5F1P6-201ENST00000402768 767 ntBASIC3.4□□□□□ -1.86
SPTA1P02549 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
SPTA1P02549 REREP1Y-201ENST00000422655 198 ntBASIC3.4□□□□□ -1.86
SPTA1P02549 PRELID3BP10-201ENST00000431957 584 ntBASIC3.4□□□□□ -1.86
SPTA1P02549 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.4□□□□□ -1.86
SPTA1P02549 REREP2Y-201ENST00000439103 200 ntBASIC3.4□□□□□ -1.86
SPTA1P02549 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.4□□□□□ -1.86
SPTA1P02549 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC3.4□□□□□ -1.86
SPTA1P02549 AL121594.4-201ENST00000556211 1196 ntBASIC3.4□□□□□ -1.86
SPTA1P02549 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.4□□□□□ -1.86
SPTA1P02549 AL390838.2-201ENST00000602394 274 ntBASIC3.4□□□□□ -1.86
SPTA1P02549 RPL12P50-201ENST00000603116 116 ntBASIC3.4□□□□□ -1.86
SPTA1P02549 AC079684.1-201ENST00000621405 437 ntBASIC3.4□□□□□ -1.86
SPTA1P02549 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
SPTA1P02549 AP000641.1-201ENST00000531988 1639 ntBASIC3.4□□□□□ -1.87
SPTA1P02549 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SPTA1P02549 DDX18P4-201ENST00000511690 1966 ntBASIC3.4□□□□□ -1.87
SPTA1P02549 RNA5SP374-201ENST00000362939 125 ntBASIC3.4□□□□□ -1.87
SPTA1P02549 ATP5JP1-201ENST00000431631 322 ntBASIC3.4□□□□□ -1.87
SPTA1P02549 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.4□□□□□ -1.87
SPTA1P02549 AC006511.1-201ENST00000470614 315 ntBASIC3.4□□□□□ -1.87
SPTA1P02549 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.4□□□□□ -1.87
SPTA1P02549 AC006116.10-201ENST00000591836 581 ntBASIC3.4□□□□□ -1.87
SPTA1P02549 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.4□□□□□ -1.87
SPTA1P02549 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC3.4□□□□□ -1.87
SPTA1P02549 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.4□□□□□ -1.87
SPTA1P02549 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
SPTA1P02549 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
SPTA1P02549 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SPTA1P02549 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC3.39□□□□□ -1.87
SPTA1P02549 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.39□□□□□ -1.87
SPTA1P02549 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.39□□□□□ -1.87
SPTA1P02549 RPS21P8-201ENST00000413365 247 ntBASIC3.39□□□□□ -1.87
SPTA1P02549 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms