Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.17□□□□□ -1.9
SDCBPO00560 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC3.17□□□□□ -1.9
SDCBPO00560 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.17□□□□□ -1.9
SDCBPO00560 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.17□□□□□ -1.9
SDCBPO00560 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.17□□□□□ -1.9
SDCBPO00560 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.17□□□□□ -1.9
SDCBPO00560 MIR4644-201ENST00000579929 84 ntBASIC3.17□□□□□ -1.9
SDCBPO00560 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC3.17□□□□□ -1.9
SDCBPO00560 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.17□□□□□ -1.9
SDCBPO00560 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.17□□□□□ -1.9
SDCBPO00560 AL606490.9-201ENST00000603331 271 ntBASIC3.17□□□□□ -1.9
SDCBPO00560 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.17□□□□□ -1.9
SDCBPO00560 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.17□□□□□ -1.9
SDCBPO00560 U7.8-201ENST00000619968 63 ntBASIC3.17□□□□□ -1.9
SDCBPO00560 AC079684.1-201ENST00000621405 437 ntBASIC3.17□□□□□ -1.9
SDCBPO00560 AF001550.2-201ENST00000636643 217 ntBASIC3.17□□□□□ -1.9
SDCBPO00560 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
SDCBPO00560 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.17□□□□□ -1.9
SDCBPO00560 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SDCBPO00560 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.17□□□□□ -1.9
SDCBPO00560 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
SDCBPO00560 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SDCBPO00560 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.16□□□□□ -1.9
SDCBPO00560 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SDCBPO00560 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.16□□□□□ -1.9
SDCBPO00560 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SDCBPO00560 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SDCBPO00560 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.16□□□□□ -1.9
SDCBPO00560 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.16□□□□□ -1.9
SDCBPO00560 AC098592.2-201ENST00000413158 265 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC3.16□□□□□ -1.9
SDCBPO00560 HMGB1P32-201ENST00000425971 565 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.16□□□□□ -1.9
SDCBPO00560 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC3.16□□□□□ -1.9
SDCBPO00560 AC022022.1-201ENST00000430304 178 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 MTND2P2-201ENST00000434633 945 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 BTG3P1-201ENST00000435859 716 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.16□□□□□ -1.9
SDCBPO00560 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.16□□□□□ -1.9
SDCBPO00560 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.16□□□□□ -1.9
SDCBPO00560 EIF2S2P4-201ENST00000461070 984 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 CEACAMP10-202ENST00000495431 496 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 MIR2116-201ENST00000517221 80 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 AC022695.1-201ENST00000522089 237 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC3.16□□□□□ -1.9
SDCBPO00560 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.16□□□□□ -1.9
SDCBPO00560 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.16□□□□□ -1.9
SDCBPO00560 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.16□□□□□ -1.9
SDCBPO00560 CBX3P5-201ENST00000552017 521 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 AC234775.3-201ENST00000564612 656 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 CYP2C60P-201ENST00000566088 139 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 MIR4738-201ENST00000579134 87 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 AC005255.1-201ENST00000593748 216 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 KLKP1-201ENST00000595979 403 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.16□□□□□ -1.9
SDCBPO00560 AC096586.2-201ENST00000610260 441 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 uc_338.32-201ENST00000615087 172 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.16□□□□□ -1.9
SDCBPO00560 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.16□□□□□ -1.9
SDCBPO00560 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.16□□□□□ -1.9
SDCBPO00560 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
SDCBPO00560 OTUD4P1-201ENST00000237841 3067 ntBASIC3.16□□□□□ -1.9
SDCBPO00560 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC3.15□□□□□ -1.9
SDCBPO00560 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.15□□□□□ -1.9
SDCBPO00560 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
SDCBPO00560 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SDCBPO00560 RN7SKP44-201ENST00000363602 316 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 RNU6-283P-201ENST00000364788 107 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SDCBPO00560 RNU1-13P-201ENST00000384499 162 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 ZNF602P-201ENST00000405929 924 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 AL136131.1-201ENST00000406079 803 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 RNU6-628P-201ENST00000410675 107 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 SNORA57.3-201ENST00000411095 141 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 AL450992.3-201ENST00000413192 568 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 SLC4A1APP1-201ENST00000419995 602 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 MTND4LP13-201ENST00000425022 298 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 DPY19L1P2-201ENST00000426647 915 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 AC244033.1-201ENST00000426826 870 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 YY1P1-201ENST00000427625 668 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 AL117339.2-201ENST00000430475 180 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 BMS1P19-201ENST00000433925 393 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 NDUFB1P1-201ENST00000435191 180 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 Z74696.2-201ENST00000436514 498 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 H2AFZP6-201ENST00000444403 394 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.15□□□□□ -1.91
SDCBPO00560 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC3.15□□□□□ -1.91
SDCBPO00560 CYCSP53-201ENST00000455540 265 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 RPS3AP50-201ENST00000487064 803 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.15□□□□□ -1.91
SDCBPO00560 RNA5SP164-201ENST00000516533 110 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 TBCA-203ENST00000517679 545 ntTSL 3 BASIC3.15□□□□□ -1.91
SDCBPO00560 AC008802.1-201ENST00000519121 791 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC3.15□□□□□ -1.91
SDCBPO00560 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.15□□□□□ -1.91
SDCBPO00560 AC008489.1-201ENST00000524271 483 ntBASIC3.15□□□□□ -1.91
SDCBPO00560 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.15□□□□□ -1.91
SDCBPO00560 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SDCBPO00560 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.15□□□□□ -1.91
SDCBPO00560 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms