Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC012519.1-201ENST00000424588 610 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 RPL7AP49-201ENST00000429522 581 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 DLGAP5P1-201ENST00000430307 464 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 BX276092.6-201ENST00000430476 250 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AL513175.1-201ENST00000431492 780 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AL591438.1-201ENST00000433508 581 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AC023271.1-201ENST00000445936 1090 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 VN1R32P-201ENST00000452234 905 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 BX276092.8-201ENST00000455722 250 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 UBA52P3-201ENST00000491303 382 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AC104685.1-201ENST00000502445 371 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AC010350.1-201ENST00000504908 231 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 MTCO3P7-201ENST00000510008 774 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 GVINP1-202ENST00000531871 7271 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 RFPL1S-203ENST00000539579 330 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 BGLT3-201ENST00000564523 994 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 RN7SKP299-201ENST00000606679 301 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AC008443.7-201ENST00000622195 246 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 PCMTD1P7-201ENST00000634506 357 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 OR9K1P-202ENST00000641111 3217 ntBASIC5.27□□□□□ -1.57
TDP1Q9NUW8 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.27□□□□□ -1.57
TDP1Q9NUW8 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 RNU6-500P-201ENST00000362349 107 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 RNA5SP223-201ENST00000365174 120 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 Y_RNA.505-201ENST00000384489 102 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 SNORA26.8-201ENST00000391306 124 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 CYB5AP4-201ENST00000396692 399 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 PEX12P1-201ENST00000400284 1048 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AL136133.1-201ENST00000413694 376 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 RPL26P29-201ENST00000415623 438 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AL031779.1-201ENST00000415663 330 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 HSPD1P12-201ENST00000429127 1069 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AL138878.2-201ENST00000440581 1241 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 CEACAMP9-201ENST00000442990 513 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 MTND2P19-201ENST00000449129 1012 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 RNU6-1218P-201ENST00000458990 108 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 LTV1P1-201ENST00000510683 1237 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 MTND3P5-201ENST00000512798 333 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 OR5AK1P-201ENST00000524837 922 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 HIGD1AP10-201ENST00000527837 282 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AC137768.1-201ENST00000549998 553 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 MIR4737-201ENST00000583979 81 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AC006270.3-201ENST00000605967 1036 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AC245297.2-201ENST00000610119 565 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AC010632.3-201ENST00000611377 369 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AC234782.5-201ENST00000617723 324 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AC243756.2-201ENST00000618406 463 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 AC015804.1-201ENST00000622935 435 ntBASIC5.26□□□□□ -1.57
TDP1Q9NUW8 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TDP1Q9NUW8 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms