Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 RN7SKP263-201ENST00000411194 309 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AL591848.1-201ENST00000413092 322 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC004690.1-201ENST00000418216 328 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 HIGD1AP12-201ENST00000427832 281 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC092634.2-201ENST00000428146 1010 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 PTGES3P1-201ENST00000439531 483 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 TXNP5-201ENST00000441043 315 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 MRPL48P1-201ENST00000445390 636 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AL358794.1-201ENST00000445689 381 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 ZNF736P8Y-201ENST00000451913 669 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 NPM1P13-201ENST00000452663 865 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AURKAPS2-201ENST00000454983 333 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 RPS17P2-201ENST00000461663 408 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 RN7SL517P-201ENST00000462240 305 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 RPL23AP71-201ENST00000470966 469 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC073522.1-201ENST00000483312 377 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 HPRT1P2-201ENST00000505250 544 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC098799.3-201ENST00000506095 438 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC119751.1-201ENST00000513357 765 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 RNU2-30P-201ENST00000516209 141 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 snoZ278.1-201ENST00000517059 112 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC010306.1-201ENST00000523223 1117 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 OR4U1P-201ENST00000554958 912 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 EIF1P6-201ENST00000600054 334 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 RPP40P2-201ENST00000603596 712 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC233280.2-201ENST00000603917 1070 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC092435.4-201ENST00000623012 4159 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AL356863.1-201ENST00000623378 1080 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AL109659.3-201ENST00000624985 950 ntBASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 THAP12P4-201ENST00000528321 2266 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 PNPT1P2-201ENST00000456768 2050 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AL122126.1-201ENST00000546905 1318 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 MIR134-201ENST00000385258 73 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 RPS24P12-201ENST00000402084 394 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AP000580.1-201ENST00000404439 358 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 SNORA11.1-201ENST00000408133 129 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 SSR1P2-201ENST00000415208 787 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms