Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MFSD13B-201ENST00000420133 1290 ntBASIC3.6□□□□□ -1.83
USF1P22415 RFESDP1-201ENST00000422350 461 ntBASIC3.6□□□□□ -1.83
USF1P22415 AL445528.1-201ENST00000426330 420 ntBASIC3.6□□□□□ -1.83
USF1P22415 COX6B1P7-201ENST00000430845 235 ntBASIC3.6□□□□□ -1.83
USF1P22415 CDY14P-201ENST00000431260 1014 ntBASIC3.6□□□□□ -1.83
USF1P22415 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.6□□□□□ -1.83
USF1P22415 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC3.6□□□□□ -1.83
USF1P22415 CDY12P-201ENST00000440679 1015 ntBASIC3.6□□□□□ -1.83
USF1P22415 CDY13P-201ENST00000445813 1015 ntBASIC3.6□□□□□ -1.83
USF1P22415 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC3.6□□□□□ -1.83
USF1P22415 RPL7P31-201ENST00000450192 724 ntBASIC3.6□□□□□ -1.83
USF1P22415 CDY23P-201ENST00000451661 1014 ntBASIC3.6□□□□□ -1.83
USF1P22415 AC092691.2-201ENST00000461787 803 ntBASIC3.6□□□□□ -1.83
USF1P22415 AC006511.1-201ENST00000470614 315 ntBASIC3.6□□□□□ -1.83
USF1P22415 HMGB1P3-201ENST00000502802 616 ntBASIC3.6□□□□□ -1.83
USF1P22415 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC3.6□□□□□ -1.83
USF1P22415 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.6□□□□□ -1.83
USF1P22415 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC3.6□□□□□ -1.83
USF1P22415 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.6□□□□□ -1.83
USF1P22415 AC105233.3-201ENST00000531125 744 ntBASIC3.6□□□□□ -1.83
USF1P22415 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.6□□□□□ -1.83
USF1P22415 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.6□□□□□ -1.83
USF1P22415 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC3.6□□□□□ -1.83
USF1P22415 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.6□□□□□ -1.83
USF1P22415 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.6□□□□□ -1.83
USF1P22415 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USF1P22415 AC006116.5-201ENST00000591936 559 ntBASIC3.6□□□□□ -1.83
USF1P22415 AC090181.2-201ENST00000602975 672 ntBASIC3.6□□□□□ -1.83
USF1P22415 AC008638.3-201ENST00000603341 463 ntBASIC3.6□□□□□ -1.83
USF1P22415 AL161729.3-201ENST00000603533 673 ntBASIC3.6□□□□□ -1.83
USF1P22415 AC245389.1-201ENST00000605141 529 ntBASIC3.6□□□□□ -1.83
USF1P22415 AC090525.3-201ENST00000605601 189 ntBASIC3.6□□□□□ -1.83
USF1P22415 RNU4-89P-201ENST00000607443 133 ntBASIC3.6□□□□□ -1.83
USF1P22415 MIR7973-1-201ENST00000614683 76 ntBASIC3.6□□□□□ -1.83
USF1P22415 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.6□□□□□ -1.83
USF1P22415 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.6□□□□□ -1.83
USF1P22415 AC000123.2-201ENST00000623124 461 ntBASIC3.6□□□□□ -1.83
USF1P22415 CFTRP2-201ENST00000634304 199 ntBASIC3.6□□□□□ -1.83
USF1P22415 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USF1P22415 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.6□□□□□ -1.83
USF1P22415 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
USF1P22415 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.6□□□□□ -1.83
USF1P22415 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USF1P22415 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USF1P22415 AC100871.1-201ENST00000507871 1456 ntBASIC3.6□□□□□ -1.83
USF1P22415 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.6□□□□□ -1.83
USF1P22415 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
USF1P22415 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
USF1P22415 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
USF1P22415 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.59□□□□□ -1.83
USF1P22415 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
USF1P22415 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
USF1P22415 RNU1-14P-201ENST00000362759 152 ntBASIC3.59□□□□□ -1.83
USF1P22415 SNORA62.3-201ENST00000365110 153 ntBASIC3.59□□□□□ -1.83
USF1P22415 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC3.59□□□□□ -1.83
USF1P22415 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.59□□□□□ -1.83
USF1P22415 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.59□□□□□ -1.83
USF1P22415 MIR554-201ENST00000384874 96 ntBASIC3.59□□□□□ -1.83
USF1P22415 RNA5SP36-201ENST00000410197 133 ntBASIC3.59□□□□□ -1.83
USF1P22415 AC105402.1-201ENST00000413336 545 ntBASIC3.59□□□□□ -1.83
USF1P22415 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.59□□□□□ -1.83
USF1P22415 AL356095.1-201ENST00000417217 199 ntBASIC3.59□□□□□ -1.83
USF1P22415 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.59□□□□□ -1.83
USF1P22415 AL157831.1-201ENST00000426134 473 ntBASIC3.59□□□□□ -1.83
USF1P22415 SKP1P3-201ENST00000429280 487 ntBASIC3.59□□□□□ -1.83
USF1P22415 RPS24P8-201ENST00000431490 402 ntBASIC3.59□□□□□ -1.83
USF1P22415 CEACAMP1-201ENST00000434624 1035 ntBASIC3.59□□□□□ -1.83
USF1P22415 MRPS33P4-201ENST00000434892 317 ntBASIC3.59□□□□□ -1.83
USF1P22415 CBX1P4-201ENST00000439415 457 ntBASIC3.59□□□□□ -1.83
USF1P22415 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
USF1P22415 AL162151.2-201ENST00000448875 158 ntBASIC3.59□□□□□ -1.83
USF1P22415 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.59□□□□□ -1.83
USF1P22415 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC3.59□□□□□ -1.83
USF1P22415 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC3.59□□□□□ -1.83
USF1P22415 RPL35AP15-201ENST00000468042 339 ntBASIC3.59□□□□□ -1.83
USF1P22415 RN7SL132P-201ENST00000478131 296 ntBASIC3.59□□□□□ -1.83
USF1P22415 AC106872.2-201ENST00000494303 480 ntBASIC3.59□□□□□ -1.83
USF1P22415 AC146944.2-203ENST00000502493 354 ntBASIC3.59□□□□□ -1.83
USF1P22415 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC3.59□□□□□ -1.83
USF1P22415 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.59□□□□□ -1.83
USF1P22415 AC139495.1-202ENST00000513164 354 ntBASIC3.59□□□□□ -1.83
USF1P22415 RNA5SP519-201ENST00000516480 119 ntBASIC3.59□□□□□ -1.83
USF1P22415 AC023632.4-201ENST00000517783 191 ntBASIC3.59□□□□□ -1.83
USF1P22415 IGLV3-26-201ENST00000520756 302 ntBASIC3.59□□□□□ -1.83
USF1P22415 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
USF1P22415 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.59□□□□□ -1.83
USF1P22415 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.59□□□□□ -1.83
USF1P22415 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.59□□□□□ -1.83
USF1P22415 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.59□□□□□ -1.83
USF1P22415 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.59□□□□□ -1.83
USF1P22415 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC3.59□□□□□ -1.83
USF1P22415 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.59□□□□□ -1.83
USF1P22415 AL355816.1-201ENST00000607951 118 ntBASIC3.59□□□□□ -1.83
USF1P22415 OR6R2P-201ENST00000609216 300 ntBASIC3.59□□□□□ -1.83
USF1P22415 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
USF1P22415 AL356863.1-201ENST00000623378 1080 ntBASIC3.59□□□□□ -1.83
USF1P22415 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.59□□□□□ -1.83
USF1P22415 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.59□□□□□ -1.83
USF1P22415 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
USF1P22415 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.59□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms