Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.41□□□□□ -1.7
MSH3P20585 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.41□□□□□ -1.7
MSH3P20585 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.41□□□□□ -1.7
MSH3P20585 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.41□□□□□ -1.7
MSH3P20585 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.41□□□□□ -1.7
MSH3P20585 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC4.41□□□□□ -1.7
MSH3P20585 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.41□□□□□ -1.7
MSH3P20585 OR5AK3P-201ENST00000527486 1297 ntBASIC4.41□□□□□ -1.7
MSH3P20585 AC100770.1-201ENST00000532310 322 ntBASIC4.41□□□□□ -1.7
MSH3P20585 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.41□□□□□ -1.7
MSH3P20585 AC011611.5-201ENST00000552477 578 ntBASIC4.41□□□□□ -1.7
MSH3P20585 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MSH3P20585 AL132857.1-201ENST00000555180 708 ntBASIC4.41□□□□□ -1.7
MSH3P20585 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC4.41□□□□□ -1.7
MSH3P20585 ZNF971P-201ENST00000562068 1249 ntBASIC4.41□□□□□ -1.7
MSH3P20585 SS18L2P2-201ENST00000583960 235 ntBASIC4.41□□□□□ -1.7
MSH3P20585 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.41□□□□□ -1.7
MSH3P20585 AC115286.1-201ENST00000604298 434 ntBASIC4.41□□□□□ -1.7
MSH3P20585 AP002360.3-201ENST00000607673 710 ntBASIC4.41□□□□□ -1.7
MSH3P20585 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.41□□□□□ -1.7
MSH3P20585 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC4.41□□□□□ -1.7
MSH3P20585 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.41□□□□□ -1.7
MSH3P20585 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSH3P20585 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
MSH3P20585 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.41□□□□□ -1.7
MSH3P20585 AC025031.4-201ENST00000621248 3271 ntBASIC4.41□□□□□ -1.7
MSH3P20585 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MSH3P20585 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSH3P20585 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MSH3P20585 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
MSH3P20585 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
MSH3P20585 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
MSH3P20585 AC091046.3-201ENST00000631455 1574 ntBASIC4.4□□□□□ -1.7
MSH3P20585 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
MSH3P20585 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
MSH3P20585 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
MSH3P20585 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
MSH3P20585 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
MSH3P20585 IGKV7-3-201ENST00000357453 298 ntBASIC4.4□□□□□ -1.71
MSH3P20585 RNU6-185P-201ENST00000384421 107 ntBASIC4.4□□□□□ -1.71
MSH3P20585 RNU1-44P-201ENST00000384453 163 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.4□□□□□ -1.71
MSH3P20585 AL078604.1-201ENST00000404609 466 ntBASIC4.4□□□□□ -1.71
MSH3P20585 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.4□□□□□ -1.71
MSH3P20585 RN7SKP216-201ENST00000411050 312 ntBASIC4.4□□□□□ -1.71
MSH3P20585 RNA5SP498-201ENST00000411342 120 ntBASIC4.4□□□□□ -1.71
MSH3P20585 RPS20P14-201ENST00000412545 360 ntBASIC4.4□□□□□ -1.71
MSH3P20585 TMSB10P2-201ENST00000416049 131 ntBASIC4.4□□□□□ -1.71
MSH3P20585 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.4□□□□□ -1.71
MSH3P20585 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.4□□□□□ -1.71
MSH3P20585 OR2X1P-201ENST00000421144 687 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AL356387.2-201ENST00000422272 243 ntBASIC4.4□□□□□ -1.71
MSH3P20585 RPS12P5-201ENST00000423449 371 ntBASIC4.4□□□□□ -1.71
MSH3P20585 MTND2P5-201ENST00000432656 1006 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.4□□□□□ -1.71
MSH3P20585 TPTE2P3-201ENST00000441562 1189 ntBASIC4.4□□□□□ -1.71
MSH3P20585 HSFY3P-201ENST00000444242 1191 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.4□□□□□ -1.71
MSH3P20585 AC099063.2-201ENST00000446360 662 ntBASIC4.4□□□□□ -1.71
MSH3P20585 TPT1P13-201ENST00000449760 499 ntBASIC4.4□□□□□ -1.71
MSH3P20585 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
MSH3P20585 DDX39BP2-208ENST00000453923 258 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC4.4□□□□□ -1.71
MSH3P20585 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.4□□□□□ -1.71
MSH3P20585 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.4□□□□□ -1.71
MSH3P20585 RPS26P28-201ENST00000470806 348 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AC020898.1-201ENST00000474167 787 ntBASIC4.4□□□□□ -1.71
MSH3P20585 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.4□□□□□ -1.71
MSH3P20585 AC114322.1-201ENST00000506771 926 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
MSH3P20585 Y_RNA.717-201ENST00000517106 92 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.4□□□□□ -1.71
MSH3P20585 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.4□□□□□ -1.71
MSH3P20585 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.4□□□□□ -1.71
MSH3P20585 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC4.4□□□□□ -1.71
MSH3P20585 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.4□□□□□ -1.71
MSH3P20585 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.4□□□□□ -1.71
MSH3P20585 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.4□□□□□ -1.71
MSH3P20585 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
MSH3P20585 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.4□□□□□ -1.71
MSH3P20585 VN1R87P-201ENST00000596706 487 ntBASIC4.4□□□□□ -1.71
MSH3P20585 CLIC4P2-201ENST00000601934 717 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AC090181.2-201ENST00000602975 672 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AP002906.1-201ENST00000603405 233 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AC073387.2-201ENST00000604797 784 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AC006946.3-201ENST00000609791 756 ntBASIC4.4□□□□□ -1.71
MSH3P20585 FRG1HP-204ENST00000617940 757 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AL121890.3-201ENST00000618494 516 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AC073569.3-201ENST00000619055 682 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AL035461.2-201ENST00000619201 524 ntBASIC4.4□□□□□ -1.71
MSH3P20585 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC4.4□□□□□ -1.71
MSH3P20585 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.4□□□□□ -1.71
MSH3P20585 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
MSH3P20585 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.4□□□□□ -1.71
MSH3P20585 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.4□□□□□ -1.71
MSH3P20585 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
MSH3P20585 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
MSH3P20585 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.39□□□□□ -1.71
MSH3P20585 AC090971.4-201ENST00000560291 1800 ntBASIC4.39□□□□□ -1.71
MSH3P20585 BX005019.1-201ENST00000561881 1810 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms