Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNU6-603P-201ENST00000411403 107 ntBASIC3.91□□□□□ -1.78
SDC1P18827 AC011933.1-201ENST00000413334 321 ntBASIC3.91□□□□□ -1.78
SDC1P18827 AC092647.1-201ENST00000420654 287 ntBASIC3.91□□□□□ -1.78
SDC1P18827 COX6B1P7-201ENST00000430845 235 ntBASIC3.91□□□□□ -1.78
SDC1P18827 AC005189.1-201ENST00000431286 310 ntBASIC3.91□□□□□ -1.78
SDC1P18827 AC011742.1-201ENST00000431448 434 ntBASIC3.91□□□□□ -1.78
SDC1P18827 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC3.91□□□□□ -1.78
SDC1P18827 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SDC1P18827 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC1P18827 AP000949.1-201ENST00000438328 629 ntBASIC3.91□□□□□ -1.78
SDC1P18827 AC092013.1-201ENST00000438795 332 ntBASIC3.91□□□□□ -1.78
SDC1P18827 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC1P18827 CBX1P4-201ENST00000439415 457 ntBASIC3.91□□□□□ -1.78
SDC1P18827 AL353093.1-201ENST00000441292 436 ntBASIC3.91□□□□□ -1.78
SDC1P18827 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC1P18827 RPS29P33-201ENST00000456717 146 ntBASIC3.91□□□□□ -1.78
SDC1P18827 snoU13.1-201ENST00000459157 104 ntBASIC3.91□□□□□ -1.78
SDC1P18827 AC116533.1-201ENST00000459748 321 ntBASIC3.91□□□□□ -1.78
SDC1P18827 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.91□□□□□ -1.78
SDC1P18827 AC011276.1-201ENST00000469688 323 ntBASIC3.91□□□□□ -1.78
SDC1P18827 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3.91□□□□□ -1.78
SDC1P18827 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC1P18827 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.91□□□□□ -1.78
SDC1P18827 AC099522.1-202ENST00000514718 367 ntBASIC3.91□□□□□ -1.78
SDC1P18827 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC1P18827 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.91□□□□□ -1.78
SDC1P18827 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC3.91□□□□□ -1.78
SDC1P18827 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC3.91□□□□□ -1.78
SDC1P18827 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.91□□□□□ -1.78
SDC1P18827 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.91□□□□□ -1.78
SDC1P18827 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.91□□□□□ -1.78
SDC1P18827 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC3.91□□□□□ -1.78
SDC1P18827 AC079610.2-201ENST00000604818 690 ntBASIC3.91□□□□□ -1.78
SDC1P18827 AC007423.1-201ENST00000605009 627 ntBASIC3.91□□□□□ -1.78
SDC1P18827 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.91□□□□□ -1.78
SDC1P18827 AC092574.1-201ENST00000609771 420 ntBASIC3.91□□□□□ -1.78
SDC1P18827 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.91□□□□□ -1.78
SDC1P18827 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
SDC1P18827 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
SDC1P18827 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SDC1P18827 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.91□□□□□ -1.78
SDC1P18827 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
SDC1P18827 AC006042.3-201ENST00000454684 1469 ntBASIC3.91□□□□□ -1.78
SDC1P18827 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.91□□□□□ -1.78
SDC1P18827 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.91□□□□□ -1.78
SDC1P18827 Z82217.1-201ENST00000625157 8149 ntBASIC3.91□□□□□ -1.78
SDC1P18827 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC3.91□□□□□ -1.78
SDC1P18827 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SDC1P18827 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SDC1P18827 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
SDC1P18827 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.9□□□□□ -1.78
SDC1P18827 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.9□□□□□ -1.78
SDC1P18827 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SDC1P18827 METTL21EP-201ENST00000298105 713 ntBASIC3.9□□□□□ -1.79
SDC1P18827 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SDC1P18827 RNU6-609P-201ENST00000365459 107 ntBASIC3.9□□□□□ -1.79
SDC1P18827 OR6K3-202ENST00000368146 996 ntBASIC3.9□□□□□ -1.79
SDC1P18827 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
SDC1P18827 RNU4-25P-201ENST00000410569 230 ntBASIC3.9□□□□□ -1.79
SDC1P18827 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.9□□□□□ -1.79
SDC1P18827 SEC63P1-201ENST00000425785 1258 ntBASIC3.9□□□□□ -1.79
SDC1P18827 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.9□□□□□ -1.79
SDC1P18827 AL358472.1-201ENST00000431295 329 ntBASIC3.9□□□□□ -1.79
SDC1P18827 BTF3P10-201ENST00000433415 495 ntBASIC3.9□□□□□ -1.79
SDC1P18827 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.9□□□□□ -1.79
SDC1P18827 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.9□□□□□ -1.79
SDC1P18827 ACTR3P2-201ENST00000439585 1257 ntBASIC3.9□□□□□ -1.79
SDC1P18827 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.9□□□□□ -1.79
SDC1P18827 CYCSP42-201ENST00000450823 238 ntBASIC3.9□□□□□ -1.79
SDC1P18827 EIF4A1P11-201ENST00000451239 222 ntBASIC3.9□□□□□ -1.79
SDC1P18827 HMGB3P22-202ENST00000451823 572 ntBASIC3.9□□□□□ -1.79
SDC1P18827 RPS29P22-201ENST00000472363 168 ntBASIC3.9□□□□□ -1.79
SDC1P18827 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
SDC1P18827 RPL29P14-201ENST00000495837 428 ntBASIC3.9□□□□□ -1.79
SDC1P18827 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.9□□□□□ -1.79
SDC1P18827 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.9□□□□□ -1.79
SDC1P18827 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC3.9□□□□□ -1.79
SDC1P18827 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC3.9□□□□□ -1.79
SDC1P18827 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC3.9□□□□□ -1.79
SDC1P18827 AL121594.4-201ENST00000556211 1196 ntBASIC3.9□□□□□ -1.79
SDC1P18827 PSMB7P1-201ENST00000556349 514 ntBASIC3.9□□□□□ -1.79
SDC1P18827 AC104229.1-201ENST00000561364 255 ntBASIC3.9□□□□□ -1.79
SDC1P18827 AC090312.1-201ENST00000580637 348 ntBASIC3.9□□□□□ -1.79
SDC1P18827 AC012417.1-201ENST00000582307 1039 ntBASIC3.9□□□□□ -1.79
SDC1P18827 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.9□□□□□ -1.79
SDC1P18827 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC3.9□□□□□ -1.79
SDC1P18827 AL356218.2-201ENST00000605264 187 ntBASIC3.9□□□□□ -1.79
SDC1P18827 AC128687.2-201ENST00000609657 566 ntBASIC3.9□□□□□ -1.79
SDC1P18827 AC116447.1-201ENST00000613153 453 ntBASIC3.9□□□□□ -1.79
SDC1P18827 MIR8084-201ENST00000614105 89 ntBASIC3.9□□□□□ -1.79
SDC1P18827 MIR7151-201ENST00000617477 60 ntBASIC3.9□□□□□ -1.79
SDC1P18827 MIR6730-201ENST00000622213 67 ntBASIC3.9□□□□□ -1.79
SDC1P18827 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC3.9□□□□□ -1.79
SDC1P18827 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.9□□□□□ -1.79
SDC1P18827 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC3.9□□□□□ -1.79
SDC1P18827 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
SDC1P18827 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
SDC1P18827 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SDC1P18827 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.9□□□□□ -1.79
SDC1P18827 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms